GlyCosmos Portal

Displaying entries **1 - 5** of 45 in total

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GO Term	Evidence Code	PMID
recycling endosome	IEA
external side of plasma membrane	IDA	19487454 20103531 9553049
Schaffer collateral - CA1 synapse	IDA IMP	17065460
cytoplasmic vesicle	IDA	12189152
membrane	IDA	23395392

GO Hierarchy

cellular component

protein-containing complex [inference]

receptor complex

plasma membrane signaling receptor complex [inference]

integrin complex

protein complex involved in cell adhesion [inference]

integrin complex

membrane protein complex [inference]

plasma membrane protein complex [inference]

plasma membrane signaling receptor complex [inference]

integrin complex

cellular anatomical entity [inference]

membrane

plasma membrane

sarcolemma

plasma membrane region [inference]

cell projection membrane [inference]

ruffle membrane

synaptic membrane

postsynaptic membrane

membrane microdomain [inference]

membrane raft

cell junction [inference]

synapse

neuromuscular junction

excitatory synapse [inference]

asymmetric, glutamatergic, excitatory synapse [inference]

cerebellar climbing fiber to Purkinje cell synapse

glutamatergic synapse

asymmetric, glutamatergic, excitatory synapse [inference]

cerebellar climbing fiber to Purkinje cell synapse

neuron to neuron synapse [inference]

asymmetric synapse [inference]

asymmetric, glutamatergic, excitatory synapse [inference]

cerebellar climbing fiber to Purkinje cell synapse

anchoring junction [inference]

cell-cell junction

adherens junction

cell-cell contact zone [inference]

intercalated disc

cell-substrate junction [inference]

external encapsulating structure [inference]

extracellular matrix [inference]

collagen-containing extracellular matrix [inference]

basement membrane

leading edge membrane [inference]

ruffle membrane

myelin sheath abaxonal region

cell projection [inference]

plasma membrane bounded cell projection [inference]

lamellipodium

neuron projection [inference]

neuron spine [inference]

dendritic spine

glial cell projection

actin-based cell projection [inference]

filopodium

organelle [inference]

membrane-bounded organelle [inference]

vesicle [inference]

intracellular vesicle [inference]

cytoplasmic vesicle

endosome [inference]

recycling endosome

pigment granule [inference]

melanosome

secretory vesicle [inference]

secretory granule [inference]

acrosomal vesicle

intracellular membrane-bounded organelle [inference]

intracellular vesicle [inference]

cytoplasmic vesicle

endosome [inference]

recycling endosome

pigment granule [inference]

melanosome

secretory vesicle [inference]

secretory granule [inference]

acrosomal vesicle

intracellular organelle [inference]

intracellular membrane-bounded organelle [inference]

intracellular vesicle [inference]

cytoplasmic vesicle

endosome [inference]

recycling endosome

pigment granule [inference]

melanosome

secretory vesicle [inference]

secretory granule [inference]

acrosomal vesicle

perinuclear region of cytoplasm

side of membrane [inference]

external side of plasma membrane

postsynapse [inference]

dendritic spine

Displaying entries **1 - 5** of 22 in total

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GO Term	Evidence Code	PMID
kinase binding	ISO
protein binding	IPI	10613898 10634791 11223950 12189152 12904471 15102471 15466886 15723043 17377534 18278053 18794329 20802515 21427700 22357865 23395392 34427057
actin binding	IEA ISO
integrin binding	IBA IPI ISO	1833411 8601592
C-X3-C chemokine binding	IBA ISO ISS

GO Hierarchy

molecular function

binding [inference]

protein binding

fibronectin binding

signaling receptor binding

integrin binding

integrin binding involved in cell-matrix adhesion

cytoskeletal protein binding [inference]

actin binding

actinin binding [inference]

alpha-actinin binding

enzyme binding [inference]

protease binding

kinase binding

protein kinase binding

protein tyrosine kinase binding

protein domain specific binding

cytokine binding [inference]

chemokine binding [inference]

C-X3-C chemokine binding

laminin binding

protein dimerization activity [inference]

protein heterodimerization activity

cell adhesion molecule binding

integrin binding

integrin binding involved in cell-matrix adhesion

cell adhesion mediator activity [inference]

cell-matrix adhesion mediator activity [inference]

ion binding [inference]

cation binding [inference]

metal ion binding [inference]

protein-containing complex binding

integrin binding

integrin binding involved in cell-matrix adhesion

collagen binding

collagen binding involved in cell-matrix adhesion

extracellular matrix binding [inference]

laminin binding

molecular transducer activity [inference]

signaling receptor activity

Gene Ontology information from NCBI Gene and UniProt.

OrthoDB (Group)

Group level

Rodentia

Group Name

integrin beta-1

Functional Category

G: Carbohydrate transport and metabolism
P: Inorganic ion transport and metabolism
T: Signal transduction mechanisms

Displaying **all 8** entries
Gene Ontology
C-X3-C chemokine binding
cell adhesion mediated by integrin
cell migration
collagen binding involved in cell-matrix adhesion
fibronectin binding
integrin binding
integrin-mediated signaling pathway
muscle organ development

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InterPro
EGF-like domain, extracellular
Integrin beta N-terminal
Integrin beta subunit, VWA domain
Integrin beta subunit, cytoplasmic domain
Integrin beta subunit, tail
Integrin beta subunit
Integrin beta tail domain superfamily
Integrin beta, epidermal growth factor-like domain 1
Integrin domain superfamily
PSI domain

Disease

Disease Ontology

Displaying **all 7** entries
DO ID	Disease Name	Source
DOID:10487	Hirschsprung's disease	Alliance of Genome Resources
DOID:10908	hydrocephalus	Alliance of Genome Resources
DOID:162	cancer	Alliance of Genome Resources
DOID:2921	glomerulonephritis	Alliance of Genome Resources
DOID:3908	lung non-small cell carcinoma	Alliance of Genome Resources
DOID:5409	lung small cell carcinoma	Alliance of Genome Resources
DOID:5844	myocardial infarction	Alliance of Genome Resources

Ortholog

Displaying entries **1 - 10** of **120** in total

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Species	Gene ID	OrthoDB	Alliance of Genome Resources	Orthologous MAtrix
Homo sapiens	3688		HGNC:6153	HUMAN00778
Rattus norvegicus	24511	10116_1:004fe7	RGD:2927	RATNO15172
Drosophila melanogaster	44885		FB:FBgn0004657
Caenorhabditis elegans	175504		WB:WBGene00003930
Bos taurus	281876			BOVIN04365
Xenopus tropicalis	394767		Xenbase:XB-GENE-946725
Sus scrofa	397019			PIGXX00745
Danio rerio	405864		ZFIN:ZDB-GENE-040426-2598
Ovis aries	443141			SHEEP04158
Pan troglodytes	450396			PANTR00426

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

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Tools

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Summary

External Links

Annotation

OrthoDB (Group)

International Collaboration

Acknowledgements