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GlyTouCan
Glycan Structure Repository
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Glycoconjugate Repository
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Glycomics MS raw data Repository
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Glycomics MS Repository for glycan annotations from GlycoWorkbench
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Repository for lectin-assisted multimodality data
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G01614ZM
Summary
- GlyTouCan ID
-
G01614ZM
- IUPAC Condensed
- Neu5Ac(a2-3)Gal(b1-3)[Neu5Ac(a2-6)]GalNAc(a1-
- Motifs
- Di-sialyl T antigen
- Subsumption Level
- Fully-defined saccharide
- Monoisotopic Mass
- 965.33
External Links
- GlyConnect structure
- GlyGen
- ChEBI
- PubChem Compound
- PubChem Substance
- CarbBank
- 600 601 602 604 605 606 607 608 3657 3749 4200 4457 5161 5215 7941 7942 7951 8011 8012 8013 8014 8015 8016 8017 8018 8019 13281 13571 18996 21557 21898 22442 22747 22750 22770 23361 24978 29113 30507 32227 32428 32429 35081 35742 35990 42351 44021 45096 46409
3D Structures
G30110UW
G04267XF
Organisms
| Organisms | Evidence |
|---|---|
| Mus musculus (house mouse) | |
| Canis lupus familiaris (dog) | |
| Danio rerio (zebrafish) | |
| Friend murine leukemia virus | |
| Rattus norvegicus (Norway rat) |
Taxonomic Hierarchy
root
cellular organisms [inference]
GlycoGene Database (GGDB)
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| ST6GALNAC4 | CMP-Neu5Ac |
G65562ZE
|
Ser/Thr |
G01614ZM
|
Ser/Thr | |
| ST6GALNAC4 | CMP-Neu5Ac |
G65562ZE
|
R |
G01614ZM
|
R | |
| ST6GALNAC2 | CMP-Neu5Ac |
G65562ZE
|
Ser/Thr |
G01614ZM
|
Ser/Thr | |
| ST6GALNAC3 | CMP-Neu5Ac |
G65562ZE
|
Ser/Thr |
G01614ZM
|
Ser/Thr | |
| ST6GALNAC1 | CMP-Neu5Ac |
G65562ZE
|
Ser/Thr |
G01614ZM
|
Ser/Thr |
| Gene Symbol | Donor | Acceptor | Reducing terminal(Acceptor) | Product | Reducing terminal(Product) | Reference |
|---|---|---|---|---|---|---|
| ST6GALNAC4 | CMP-Neu5Ac |
G65562ZE
|
Ser/Thr |
G01614ZM
|
Ser/Thr | |
| ST6GALNAC4 | CMP-Neu5Ac |
G65562ZE
|
R |
G01614ZM
|
R | |
| ST6GALNAC2 | CMP-Neu5Ac |
G65562ZE
|
Ser/Thr |
G01614ZM
|
Ser/Thr | |
| ST6GALNAC4 | CMP-Neu5Ac |
G65562ZE
|
benzyl |
G01614ZM
|
benzyl | |
| ST6GALNAC3 | CMP-Neu5Ac |
G65562ZE
|
Ser/Thr |
G01614ZM
|
Ser/Thr |
KEGG BRITE Database
Core Protein
| UniProt ID | Protein Name | Reference | Source |
|---|---|---|---|
| B8Q179 | Glycophorin B Miltenberger subtype III | ||
| P00743 | Coagulation factor X | ||
| P00747 | Plasminogen | ||
| P01215 | Glycoprotein hormones alpha chain | ||
| P01563 | Interferon alpha-2 | ||
| P01588 | Erythropoietin | ||
| P01824 | Immunoglobulin heavy variable 4-39 | ||
| P01876 | Immunoglobulin heavy constant alpha 1 | ||
| P01880 | Immunoglobulin heavy constant delta | ||
| P02656 | Apolipoprotein C-III |
GlycoEpitope
- Epitope ID
- EP0023
GlycomeAtlas
Tissues in which this glycan is expressed are highlighted in yellow.
- Danio rerio
Literature
- Tissue
-
- brain
- gill
- heart
- intestine
- liver
- skin gland
- testis
- Reference
- Yamakawa N et al. Systems glycomics of adult zebrafish identifies organ-specific sialylation and glycosylation patterns. Nat Commun. 2018;9(1):4647. Published 2018 Nov 7. doi:10.1038/s41467-018-06950-3
- DOI
- 10.1038/s41467-018-06950-3
Localization sites organized by hierarchy by Uber-anatomy ontology (UBERON)
Sequence Descriptors
- GlycoCT
-
RES 1b:a-dgal-HEX-1:5 2s:n-acetyl 3b:b-dgal-HEX-1:5 4b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 5s:n-acetyl 6b:a-dgro-dgal-NON-2:6|1:a|2:keto|3:d 7s:n-acetyl LIN 1:1d(2+1)2n 2:1o(3+1)3d 3:3o(3+2)4d 4:4d(5+1)5n 5:1o(6+2)6d 6:6d(5+1)7n
- WURCS
- WURCS=2.0/3,4,3/[a2112h-1a_1-5_2*NCC/3=O][a2112h-1b_1-5][Aad21122h-2a_2-6_5*NCC/3=O]/1-2-3-3/a3-b1_a6-d2_b3-c2
Literature
| PubMed ID | Title | First Author | Publication Date | Source |
|---|---|---|---|---|
| 9449027 | Carbohydrate and peptide structure of the alpha- and beta-subunits of human chorionic gonadotropin from normal and aberrant pregnancy and choriocarcinoma | Elliott MM | 1997 Aug |
|
| 8942648 | Peptide, Disulfide, and Glycosylation Mapping of Recombinant Human Thrombopoietin from Ser1 to Arg246 | Hoffman RC | 1996 Jan 01 |
|
| 8969192 | Comparison of O-linked carbohydrate chains in MUC-1 mucin from normal breast epithelial cell lines and breast carcinoma cell lines. Demonstration of simpler and fewer glycan chains in tumor cells | Lloyd KO | 1996 Dec 27 |
|
| 7737204 | Structural Analysis of the Sialylated N- and O-Linked Carbohydrate Chains of Recombinant Human Erythropoietin Expressed in Chinese Hamster Ovary Cells. Sialylation Patterns and Branch Location of Dimeric N-acetyllactosamine Units | Hokke CH | 1995 Mar 15 |
|
| 8034632 | Sialylation and sulfation of the carbohydrate chains in respiratory mucins from a patient with cystic fibrosis | Lo-Guidice JM | 1994 Jul 22 |
|
| 7509790 | Common tetrasaccharide epitope NeuAc alpha 2-->3Gal beta 1-->3(Neu-Ac alpha 2-->6)GalNAc, presented by different carrier glycosylceramides or O-linked peptides, is recognized by different antibodies and ligands having distinct specificities | Saito S | 1994 Feb 25 |
|
| 8054720 | Structure determination of the intact major sialylated oligosaccharide chains of recombinant human erythropoietin expressed in Chinese hamster ovary cells | Watson E | 1994 Apr |
|
| 8460945 | Structures of Mucin-Type Sugar Chains on Human Erythropoietins Purified from Urine and the Culture Medium of Recombinant Chinese Hamster Ovary Cells | Inoue N | 1993 Mar |
|
| 8345526 | Crystallographic Refinement and Structure Analysis of the Complex of Wheat Germ Agglutinin with a Bivalent Sialoglycopeptide from Glycophorin A | Wright CS | 1993 Jul 20 |
|
| 8344280 | Biosynthesis and secretion of human interleukin 2 glycoprotein variants from baculovirus-infected Sf21 cells. Characterization of polypeptides and posttranslational modifications | Grabenhorst E | 1993 Jul 01 |
|
PubAnnotation
