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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | December 11, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 8HC3 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 2 YB9-258 Fabs (2 RBD up) | |
| 8HC4 | P0DTC2 | SARS-CoV-2 wildtype spike trimer (6P) in complex with 3 YB9-258 Fabs and 3 R1-32 Fabs (3 RBD up) | |
| 8HC5 | P0DTC2 | SARS-CoV-2 wildtype S1 in complex with YB9-258 Fab and R1-32 Fab | |
| 8HC6 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with YB9-258 Fab, focused refinement of Fab region | |
| 8HC7 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) complex with YB9-258 Fab, focused refinement of RBD-dimer region | |
| 8HC8 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with YB13-292 Fab, focused refinement of Fab region | |
| 8HC9 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 3 YB13-292 Fabs (3 RBD down) | |
| 8HCA | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 3 YB13-292 Fabs (1 RBD up) | |
| 8HCB | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 3 YB13-292 Fabs (2 RBD up) | |
| 7WWI | P0DTC2 | SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab in the class 1 conformation | |
| 7WWJ | P0DTC2 | SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab in the class 2 conformation | |
| 7U0Q | P0DTC2 | SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 002-02 | |
| 7U0X | P0DTC2 | SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 002-13 | |
| 7WP6 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 recombinant spike protein STFK in complex with three neutralizing antibodies | |
| 7WSC | P0DTC2 | Local structure of BD55-3500 and omicron RBD complex | |
| 7X2H | P0DTC2 | Crystal structure of SARS-CoV-2 spike receptor-binding domain bound with 6-2C Fab | |
| 7XDB | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron Spike protein in complex with BA7208 fab | |
| 7XDK | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Delta Spike protein in complex with BA7054 and BA7125 fab | |
| 7ZSD | P0DTC2 | cryo-EM structure of omicron spike in complex with de novo designed binder, local | |
| 7ZSS | P0DTC2 | cryo-EM structure of D614 spike in complex with de novo designed binder | |
| 8AQS | P0DTC2 | BA.4/5 SARS-CoV-2 Spike bound to human ACE2 (local) | |
| 8AQT | P0DTC2 | Beta SARS-CoV-2 Spike bound to mouse ACE2 (local) | |
| 8AQU | P0DTC2 | BA.1 SARS-CoV-2 Spike bound to mouse ACE2 (local) | |
| 8AQV | P0DTC2 | BA.2.12.1 SARS-CoV-2 Spike bound to mouse ACE2 (local) | |
| 8H5T | P0DTC2 | Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-015 | |
| 8H5U | P0DTC2 | Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-021 | |
| 8HP9 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.2 S-trimer in complex with fab L4.65 and L5.34 | |
| 8HPQ | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.4 S-trimer in complex with fab L4.65 and L5.34 | |
| 8HPV | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron Prototype S-trimer in complex with fab L4.65 and L5.34 | |
| 8KA8 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Delta RBD in complex with golden hamster ACE2 (local refinement) | |
| 8KC2 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 BA.3 RBD in complex with golden hamster ACE2 (local refinement) | |
| 8QPR | P0DTC2 | SARS-CoV-2 S protein bound to human neutralising antibody UZGENT_G5 | |
| 8QQ0 | P0DTC2 | SARS-CoV-2 S protein bound to neutralising antibody UZGENT_A3 | |
| 7K9J | P0DTC2 | SARS-CoV-2 Spike in complex with neutralizing Fab 2H04 (three down conformation) | |
| 7MZH | P0DTC2 | SARS-CoV-2 receptor binding domain bound to Fab WCSL 119 | |
| 7S0B | P0DTC2 | Structure of the SARS-CoV-2 RBD in complex with neutralizing antibody N-612-056 | |
| 7SOA | P0DTC2 | SARS-CoV-2 S NTD B.1.617.2 delta variant + S2L20 Local Refinement | |
| 7SOC | P0DTC2 | SARS-CoV-2 S RBD B.1.617.1 kappa variant S309 Local Refinement | |
| 7SOE | P0DTC2 | SARS-CoV-2 S B.1.617.1 kappa variant + S2X303 Global Refinement | |
| 7SXV | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417N mutant spike protein ectodomain | |
| 7SY5 | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417N mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) | |
| 7SY7 | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417T mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) | |
| 7V7N | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), all RBD-down conformation | |
| 7V82 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1) in complex with Angiotensin-converting enzyme 2 (ACE2) ectodomain, three ACE2-bound form conformation 1 | |
| 7SPO | P0DTC2 | Crystal structure of the SARS-CoV-2 receptor binding domain in complex with VNAR 3B4 | |
| 7SPP | P0DTC2 | Crystal structure of the SARS-CoV-2 receptor binding domain in complex with VNAR 2C02 | |
| 7TAS | P0DTC2 | SARS-CoV-2 spike in complex with the S2K146 neutralizing antibody Fab fragment (local refinement of the RBD and S2K146) | |
| 7TAT | P0DTC2 | SARS-CoV-2 spike in complex with the S2K146 neutralizing antibody Fab fragment (two receptor-binding domains open) | |
| 7R10 | P0DTC2 | Dissociated S1 domain of Alpha Variant SARS-CoV-2 Spike bound to ACE2 | |
| 7R1A | P0DTC2 | Furin Cleaved Alpha Variant SARS-CoV-2 Spike in complex with 3 ACE2 |
