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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | December 11, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 8DMA | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.1 spike protein in complex with mouse ACE2 (focused refinement of RBD and ACE2) | |
| 7U8E | P0DTC2 | Crystal structure of antibody Ab246 in complex with SARS-CoV-2 receptor binding domain | |
| 7XDL | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Delta Spike protein in complex with BA7208 and BA7125 fab | |
| 7UOW | P0DTC2 | SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 034_32 | |
| 7WN2 | P0DTC2 | Crystal structure of SARS-CoV-2 spike receptor-binding domain (RBD) in complex with NCV2SG53 Fab | |
| 7WNB | P0DTC2 | Crystal structure of SARS-CoV-2 spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab | |
| 7XJ6 | P0DTC2 | SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 1 conformation | |
| 7XJ8 | P0DTC2 | SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab and 58G6 Fab in the class 2 conformation | |
| 8C1V | P0DTC2 | SARS-CoV-2 S-trimer (3 RBDs up) bound to TriSb92, fitted into cryo-EM map | |
| 8I5H | P0DTC2 | Crystal structure of SARS-CoV-2 delta variant spike receptor-binding domain (RBD) in complex with NCV2SG48 Fab | |
| 7Y1Y | P0DTC2 | S-ECD (Omicron BA.2) in complex with PD of ACE2 | |
| 7Y1Z | P0DTC2 | S-ECD (Omicron BA.3) in complex with three PD of ACE2 | |
| 7YBI | P0DTC2 | SARS-CoV-2 Mu variant spike (open state) | |
| 8GTO | P0DTC2 | cryo-EM structure of Omicron BA.5 S protein in complex with XGv282 | |
| 8GTP | P0DTC2 | cryo-EM structure of Omicron BA.5 S protein in complex with XGv289 | |
| 8GTQ | P0DTC2 | cryo-EM structure of Omicron BA.5 S protein in complex with S2L20 | |
| 8A95 | P0DTC2 | SARS Cov2 Spike RBD in complex with Fab47 | |
| 8A95 | P0DTC2 | SARS Cov2 Spike RBD in complex with Fab47 | |
| 8AJA | P0DTC2 | Structure of the Ancestral Scaffold Antigen-5 of Coronavirus Spike protein | |
| 8AJL | P0DTC2 | Structure of the Ancestral Scaffold Antigen-6 of Coronavirus Spike protein | |
| 8IV4 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike protein in complex with double nAbs 8H12 and 3E2 (local refinement) | |
| 8IV5 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike protein in complex with double nAbs 8H12 and 1C4 (local refinement) | |
| 8IV8 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike protein in complex with double nAbs 3E2 and 1C4 (local refinement) | |
| 8IVA | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike protein in complex with double nAbs XMA01 and 3E2 (local refinement) | |
| 8SK5 | P0DTC2 | Crystal structure of the SARS-CoV-2 neutralizing VHH 7A9 bound to the spike receptor binding domain | |
| 7TPI | P0DTC2 | SARS-CoV-2 E406W mutant Spike ectodomain | |
| 8F4P | P0DTC2 | SARS-CoV-2 spike protein trimer (down conformation) bound with a nanobody | |
| 8U28 | P0DTC2 | Gaussian mixture model based single particle refinement - SARS (SARS-CoV-2 Spike Proteins on intact virions from EMPIAR-10492) | |
| 8F2J | P0DTC2 | Crystal structure of antibody WRAIR-2134 in complex with SARS-CoV-2 receptor binding domain | |
| 8FAH | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with SARS-CoV-2 reactive human antibody CR3022 | |
| 8K45 | P0DTC2 | A potent and broad-spectrum neutralizing nanobody for SARS-CoV-2 viruses including all major Omicron strains | |
| 8K46 | P0DTC2 | A potent and broad-spectrum neutralizing nanobody for SARS-CoV-2 viruses including all major Omicron strains | |
| 8K47 | P0DTC2 | A potent and broad-spectrum neutralizing nanobody for SARS-CoV-2 viruses including all major Omicron strains | |
| 8SGU | P0DTC2 | Crystal structure of the SARS-CoV-2 receptor binding domain | |
| 8SMI | P0DTC2 | Crystal structure of antibody WRAIR-2123 in complex with SARS-CoV-2 receptor binding domain | |
| 8WOX | P0DTC2 | Cryo-EM structure of SARS-CoV-2 prototype RBD in complex with rabbit ACE2 (local refinement) | |
| 8WOY | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.4/5 RBD in complex with rabbit ACE2 (local refinement) | |
| 8WTD | P0DTC2 | XBB.1.5.10 RBD in complex with ACE2 | |
| 7DHX | P0DTC2 | Crystal structure of SARS-CoV-2 RBD binding to pangolin ACE2 | |
| 7MZJ | P0DTC2 | SARS-CoV-2 receptor binding domain bound to Fab WCSL 129 and Fab PDI 93 | |
| 7S0C | P0DTC2 | Structure of the SARS-CoV-2 S 6P trimer in complex with neutralizing antibody N-612-017 | |
| 7SOF | P0DTC2 | SARS-CoV-2 S NTD B.1.617.1 kappa variant S2X303 Local Refinement | |
| 7SXY | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G mutant spike protein ectodomain bound to human ACE2 ectodomain (focused refinement of RBD and ACE2) | |
| 7SY1 | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G,N501Y mutant spike protein ectodomain bound to human ACE2 ectodomain (global refinement) | |
| 7SY2 | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G,N501Y mutant spike protein ectodomain bound to human ACE2 ectodomain (focused refinement of RBD and ACE2) | |
| 7T9K | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron spike protein in complex with human ACE2 | |
| 7V7A | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Gamma variant (P.1), two RBD-up conformation | |
| 7E9O | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(3 up RBDs, state2) | |
| 7E9Q | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(1 out RBD, state3) | |
| 7Q1Z | P0DTC2 | Structure of formaldehyde cross-linked SARS-CoV-2 S glycoprotein |
