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Glycan Structure Repository
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Glycoconjugate Repository
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Glycomics MS Repository for glycan annotations from GlycoWorkbench
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Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
Syndecan-2
Summary
- UniProt ID
- P34741
- Gene Symbol
-
- SDC2
- HSPG1
- Organism
- Homo sapiens (human)
External Links
- GlyConnect
- GlyGen
- P34741
- PubChem
- P34741
- The Human Metabolome Database
- HMDBP10737
Annotation
- Keyword
-
- 3D-structure
- Differentiation
- Heparan sulfate
- Neurogenesis
- Phosphoprotein
- Reference proteome
- Signal
- Transmembrane helix
- Gene Ontology (GO)
| GO Term |
|---|
| cell migration |
| dendrite morphogenesis |
| regulation of dendrite morphogenesis |
| GO Term |
|---|
| endoplasmic reticulum lumen |
| Golgi lumen |
| cell surface |
| lysosomal lumen |
| plasma membrane |
| collagen-containing extracellular matrix |
| GO Term |
|---|
| PDZ domain binding |
| identical protein binding |
Sequence
MRRAWILLTLGLVACVSAESRAELTSDKDMYLDNSSIEEASGVYPIDDDDYASASGSGADEDVESPELTTSRPLPKILLTSAAPKVETTTLNIQNKIPAQTKSPEETDKEKVHLSDSERKMDPAEEDTNVYTEKHSDSLFKRTEVLAAVIAGGVIGFLFAIFLILLLVYRMRKKDEGSYDLGERKPSSAAYQKAPTKEFYA
Glycosylation Sites
| Position | Description | PubMed ID | GlyTouCan ID | Source |
|---|---|---|---|---|
| 41 | O-linked (Xyl...) (glycosaminoglycan) serine |
|
||
| 55 | O-linked (Xyl...) (glycosaminoglycan) serine |
|
||
| 57 | O-linked (Xyl...) (glycosaminoglycan) serine |
|
||
| 74 |
|
|||
| 77 |
|
|||
| 80 |
|
|||
| 81 |
|
|||
| 86 |
|
|||
| 88 |
|
|||
| 89 |
|
G57321FI
G57317CE
G73004SD
Feature
: Glycosylation Site from GlyGen
: Glycosylation Site from UniProt
Pathway
| Pathway Name | Organism |
|---|---|
| HS-GAG degradation | Homo sapiens |
| Post-translational protein phosphorylation | Homo sapiens |
| RSV-host interactions | Homo sapiens |
| Regulation of IGF Activity by IGFBP | Homo sapiens |
| Respiratory syncytial virus (RSV) attachment and entry | Homo sapiens |
| Retinoid metabolism and transport | Homo sapiens |
| Syndecan interactions | Homo sapiens |
Human Protein Atlas
Tissue with high expression from Human Protein Atlas. Tissues that are highly expressed are highlighted.
Disease
| DO ID | Disease Name | Source |
|---|---|---|
| DOID:0110759 | type 1 diabetes mellitus 22 | |
| DOID:0110760 | type 1 diabetes mellitus 23 | |
| DOID:0110761 | type 1 diabetes mellitus 24 | |
| DOID:0111192 | facioscapulohumeral muscular dystrophy 1 | |
| DOID:10041 | dysplastic nevus syndrome | |
| DOID:10320 | asbestosis | |
| DOID:10324 | anthracosilicosis | |
| DOID:10325 | silicosis | |
| DOID:10629 | microphthalmia | |
| DOID:1063 | interstitial nephritis |
