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PCLO piccolo presynaptic cytomatrix protein [ Taeniopygia guttata (zebra finch) ]

Gene ID: 100217797, updated on 22-Jan-2025

Summary

Gene symbol
PCLO
Gene description
piccolo presynaptic cytomatrix protein
See related
Ensembl:ENSTGUG00000002518
Gene type
protein coding
RefSeq status
MODEL
Organism
Taeniopygia guttata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Passeriformes; Passeroidea; Estrildidae; Estrildinae; Taeniopygia
Orthologs
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Genomic context

See PCLO in Genome Data Viewer
Location:
chromosome: 1A
Exon count:
25
Annotation release Status Assembly Chr Location
106 current bTaeGut1.4.pri (GCF_003957565.2) 1A NC_044212.2 (9056252..9371851)
105 previous assembly bTaeGut2.pat.W.v2 (GCF_008822105.2) 1A NC_044999.1 (9049617..9364174)

Chromosome 1A - NC_044212.2Genomic Context describing neighboring genes Neighboring gene semaphorin 3A Neighboring gene semaphorin 3E Neighboring gene uncharacterized LOC115498407 Neighboring gene calcium voltage-gated channel auxiliary subunit alpha2delta 1 Neighboring gene hepatocyte growth factor

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in GABA-ergic synapse PubMed 
located_in axon PubMed 
located_in cytoskeleton of presynaptic active zone PubMed 
located_in glutamatergic synapse PubMed 

General protein information

Preferred Names
protein piccolo
Names
aczonin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Taeniopygia guttata Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference bTaeGut1.4.pri Primary Assembly

Genomic

  1. NC_044212.2 Reference bTaeGut1.4.pri Primary Assembly

    Range
    9056252..9371851
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030291259.3XP_030147119.3  protein piccolo isoform X3

    UniProtKB/TrEMBL
    A0A674GYN6
    Conserved Domains (6) summary
    PTZ00121
    Location:10301678
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:281736
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:119437
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:45364608
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd15776
    Location:921984
    FYVE2_PCLO; FYVE-related domain 2 found in protein piccolo
    cl28890
    Location:455516
    FYVE_like_SF; FYVE domain like superfamily
  2. XM_041713755.1XP_041569689.1  protein piccolo isoform X3

    UniProtKB/TrEMBL
    A0A674GYN6
    Conserved Domains (6) summary
    PTZ00121
    Location:10301678
    PTZ00121; MAEBL; Provisional
    PHA03247
    Location:281736
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:119437
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:45364608
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd15776
    Location:921984
    FYVE2_PCLO; FYVE-related domain 2 found in protein piccolo
    cl28890
    Location:455516
    FYVE_like_SF; FYVE domain like superfamily
  3. XM_030291251.3XP_030147111.3  protein piccolo isoform X1

    UniProtKB/TrEMBL
    A0A674HRH1, H0YWC4
    Conserved Domains (8) summary
    PTZ00121
    Location:10301668
    PTZ00121; MAEBL; Provisional
    cd04031
    Location:47204854
    C2A_RIM1alpha; C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins
    PHA03247
    Location:281736
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:119437
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:45364614
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd15776
    Location:921984
    FYVE2_PCLO; FYVE-related domain 2 found in protein piccolo
    cl28890
    Location:455516
    FYVE_like_SF; FYVE domain like superfamily
    cl14603
    Location:50355160
    C2; C2 domain
  4. XM_041713754.1XP_041569688.1  protein piccolo isoform X2

    UniProtKB/TrEMBL
    H0YWC4
    Conserved Domains (8) summary
    PTZ00121
    Location:10301668
    PTZ00121; MAEBL; Provisional
    cd04031
    Location:47194853
    C2A_RIM1alpha; C2 domain first repeat contained in Rab3-interacting molecule (RIM) proteins
    PHA03247
    Location:281736
    PHA03247; large tegument protein UL36; Provisional
    PHA03307
    Location:119437
    PHA03307; transcriptional regulator ICP4; Provisional
    cd00992
    Location:45364614
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...
    cd15776
    Location:921984
    FYVE2_PCLO; FYVE-related domain 2 found in protein piccolo
    cl28890
    Location:455516
    FYVE_like_SF; FYVE domain like superfamily
    cl14603
    Location:50345159
    C2; C2 domain
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