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CD80 CD80 molecule [ Callithrix jacchus (white-tufted-ear marmoset) ]

Gene ID: 100392260, updated on 8-Mar-2024

Summary

Gene symbol
CD80
Gene description
CD80 molecule
See related
Ensembl:ENSCJAG00000008972
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Callithrix jacchus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Platyrrhini; Cebidae; Callitrichinae; Callithrix; Callithrix
Orthologs
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Genomic context

See CD80 in Genome Data Viewer
Location:
chromosome: 15
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_03 current mCalJa1.2.pat.X (GCF_011100555.1) 15 NC_071456.1 (77226063..77255127)
105 previous assembly Callithrix_jacchus_cj1700_1.1 (GCF_009663435.1) 15 NC_048397.1 (77796585..77825608)

Chromosome 15 - NC_071456.1Genomic Context describing neighboring genes Neighboring gene transcription and mRNA export factor ENY2-like Neighboring gene phospholipase A1 member A Neighboring gene ADP-ribosylarginine hydrolase Neighboring gene translocase of inner mitochondrial membrane domain containing 1 Neighboring gene uncharacterized LOC118147722 Neighboring gene protein O-glucosyltransferase 1

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in external side of plasma membrane PubMed 

General protein information

Preferred Names
T-lymphocyte activation antigen CD80

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001257221.1NP_001244150.1  T-lymphocyte activation antigen CD80 precursor

    See identical proteins and their annotated locations for NP_001244150.1

    Status: PROVISIONAL

    Source sequence(s)
    EF534214
    UniProtKB/TrEMBL
    A5HJM2, F6Y367, F6YN16
    Related
    ENSCJAP00000016431.2, ENSCJAT00000017376.2
    Conserved Domains (3) summary
    smart00410
    Location:30131
    IG_like; Immunoglobulin like
    pfam08205
    Location:138221
    C2-set_2; CD80-like C2-set immunoglobulin domain
    cl11960
    Location:31127
    Ig; Immunoglobulin domain

RefSeqs of Annotated Genomes: GCF_011100555.1-RS_2023_03

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mCalJa1.2.pat.X

Genomic

  1. NC_071456.1 Reference mCalJa1.2.pat.X

    Range
    77226063..77255127
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_008982370.4XP_008980618.1  T-lymphocyte activation antigen CD80 isoform X1

    UniProtKB/TrEMBL
    A0A5F4WGS9
    Conserved Domains (2) summary
    cd16086
    Location:28132
    IgV_CD80; Immunoglobulin variable domain (IgV) in Cluster of Differentiation (CD) 80
    cd16083
    Location:135225
    IgC1_CD80; Immunoglobulin constant (IgC)-like domain of antigen receptor Cluster of Differentiation (CD) 80; member of the C1-set of Ig superfamily (IgSF) domains
  2. XM_008982372.4XP_008980620.1  T-lymphocyte activation antigen CD80 isoform X2

    See identical proteins and their annotated locations for XP_008980620.1

    UniProtKB/TrEMBL
    A5HJM2, F6Y367, F6YN16
    Related
    ENSCJAP00000016441.2
    Conserved Domains (3) summary
    smart00410
    Location:30131
    IG_like; Immunoglobulin like
    pfam08205
    Location:138221
    C2-set_2; CD80-like C2-set immunoglobulin domain
    cl11960
    Location:31127
    Ig; Immunoglobulin domain
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