U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Sptlc2 serine palmitoyltransferase long chain base subunit 2 [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100689415, updated on 19-Jun-2024

Summary

Gene symbol
Sptlc2
Gene description
serine palmitoyltransferase long chain base subunit 2
Locus tag
I79_005786
See related
Ensembl:ENSCGRG00015002911
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Also known as
LCB2; LCB2a
Annotation information
Annotation category: partial on reference assembly
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See Sptlc2 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
11
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003613749.1 (1697479..1754458)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 5 NC_048598.1 (116422293..116493639)

NW_003613749.1Genomic Context describing neighboring genes Neighboring gene SNW domain containing 1 Neighboring gene SRA stem-loop interacting RNA binding protein Neighboring gene alkB homolog 1, histone H2A dioxygenase Neighboring gene microRNA mir-3068 Neighboring gene isthmin 2 Neighboring gene activator of HSP90 ATPase activity 1

Genomic regions, transcripts, and products

General gene information

Markers

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables pyridoxal phosphate binding IEA
Inferred from Electronic Annotation
more info
PubMed 
enables serine C-palmitoyltransferase activity IEA
Inferred from Electronic Annotation
more info
PubMed 
Process Evidence Code Pubs
involved_in ceramide biosynthetic process IEA
Inferred from Electronic Annotation
more info
PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
PubMed 
Component Evidence Code Pubs
part_of serine palmitoyltransferase complex IEA
Inferred from Electronic Annotation
more info
PubMed 

General protein information

Preferred Names
serine palmitoyltransferase 2
Names
LCB 2
Long chain base biosynthesis protein 2
Long chain base biosynthesis protein 2a
SPT 2
Serine-palmitoyl-CoA transferase 2
serine palmitoyltransferase LCB2 subunit
NP_001233609.1

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001246680.1NP_001233609.1  serine palmitoyltransferase 2

    See identical proteins and their annotated locations for NP_001233609.1

    Status: PROVISIONAL

    Source sequence(s)
    AF004830
    UniProtKB/Swiss-Prot
    O54694
    Related
    ENSCGRP00015003670.1, ENSCGRT00015004547.2
    Conserved Domains (2) summary
    PLN02483
    Location:65540
    PLN02483; serine palmitoyltransferase
    COG0156
    Location:115530
    BioF; 7-keto-8-aminopelargonate synthetase or related enzyme [Coenzyme transport and metabolism]

RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003613749.1 Reference CriGri_1.0 Primary Assembly

    Range
    1697479..1754458
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048598.1 Alternate CriGri-PICRH-1.0

    Range
    116422293..116493639
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)