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Acan aggrecan [ Cricetulus griseus (Chinese hamster) ]

Gene ID: 100764201, updated on 8-Mar-2024

Summary

Gene symbol
Acan
Gene description
aggrecan
Locus tag
I79_021328
See related
Ensembl:ENSCGRG00015000756
Gene type
protein coding
RefSeq status
MODEL
Organism
Cricetulus griseus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Cricetidae; Cricetinae; Cricetulus
Orthologs
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Genomic context

See Acan in Genome Data Viewer
Location:
chromosome: 3
Exon count:
18
Annotation release Status Assembly Chr Location
104 current CriGri_1.0 (GCF_000223135.1) Unplaced Scaffold NW_003615490.1 (29498..63326, complement)
104 current CriGri-PICRH-1.0 (GCF_003668045.3) 3 NC_048596.1 (118495965..118529904, complement)

NW_003615490.1Genomic Context describing neighboring genes Neighboring gene milk fat globule EGF and factor V/VIII domain containing Neighboring gene hyaluronan and proteoglycan link protein 3 Neighboring gene 40S ribosomal protein S27-like Neighboring gene uncharacterized LOC118237812

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding PubMed 
enables hyaluronic acid binding PubMed 

General protein information

Preferred Names
aggrecan core protein
Names
Aggrecan core protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Cricetulus griseus Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference CriGri_1.0 Primary Assembly

Genomic

  1. NW_003615490.1 Reference CriGri_1.0 Primary Assembly

    Range
    29498..63326 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027384580.2XP_027240381.1  aggrecan core protein isoform X2

    UniProtKB/TrEMBL
    G3ICD5
  2. XM_003512533.4XP_003512581.1  aggrecan core protein isoform X1

    UniProtKB/TrEMBL
    G3ICD5
    Conserved Domains (9) summary
    cd05900
    Location:42153
    Ig_Aggrecan; Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan
    cd00033
    Location:20722128
    CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
    cd03588
    Location:19452068
    CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
    PRK12688
    Location:10331440
    PRK12688; flagellin; Reviewed
    smart00410
    Location:35149
    IG_like; Immunoglobulin like
    PHA03249
    Location:743943
    PHA03249; DNA packaging tegument protein UL25; Provisional
    cd00054
    Location:19031939
    EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
    cd03517
    Location:152246
    Link_domain_CSPGs_modules_1_3; Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: ...
    cd03520
    Location:253348
    Link_domain_CSPGs_modules_2_4; Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The ...

Alternate CriGri-PICRH-1.0

Genomic

  1. NC_048596.1 Alternate CriGri-PICRH-1.0

    Range
    118495965..118529904 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_027408305.2XP_027264106.1  aggrecan core protein isoform X2

    UniProtKB/TrEMBL
    A0A9J7JHV6, G3ICD5
    Related
    ENSCGRP00015000842.2, ENSCGRT00015001079.2
  2. XM_027408304.2XP_027264105.1  aggrecan core protein isoform X1

    UniProtKB/TrEMBL
    A0A9J7FN46, G3ICD5
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