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The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference CriGri_1.0 Primary Assembly
Genomic
-
NW_003615490.1 Reference CriGri_1.0 Primary Assembly
- Range
-
29498..63326 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_027384580.2 → XP_027240381.1 aggrecan core protein isoform X2
- UniProtKB/TrEMBL
-
G3ICD5
-
XM_003512533.4 → XP_003512581.1 aggrecan core protein isoform X1
- UniProtKB/TrEMBL
-
G3ICD5
- Conserved Domains (9) summary
-
- cd05900
Location:42 → 153
- Ig_Aggrecan; Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan
- cd00033
Location:2072 → 2128
- CCP; Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system
- cd03588
Location:1945 → 2068
- CLECT_CSPGs; C-type lectin-like domain (CTLD) of the type found in chondroitin sulfate proteoglycan core proteins
- PRK12688
Location:1033 → 1440
- PRK12688; flagellin; Reviewed
- smart00410
Location:35 → 149
- IG_like; Immunoglobulin like
- PHA03249
Location:743 → 943
- PHA03249; DNA packaging tegument protein UL25; Provisional
- cd00054
Location:1903 → 1939
- EGF_CA; Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the ...
- cd03517
Location:152 → 246
- Link_domain_CSPGs_modules_1_3; Link_domain_CSPGs_modules_1_3; this extracellular link domain is found in the first and third link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan. In addition, it is found in the first link module of three other CSPGs: ...
- cd03520
Location:253 → 348
- Link_domain_CSPGs_modules_2_4; Link_domain_CSPGs_modules_2_4; this link domain is found in the second and fourth link modules of the chondroitin sulfate proteoglycan core protein (CSPG) aggrecan and, in the second link module of three other CSPGs: versican, neurocan, and brevican. The ...
Alternate CriGri-PICRH-1.0
Genomic
-
NC_048596.1 Alternate CriGri-PICRH-1.0
- Range
-
118495965..118529904 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_027408305.2 → XP_027264106.1 aggrecan core protein isoform X2
- UniProtKB/TrEMBL
- A0A9J7JHV6, G3ICD5
- Related
- ENSCGRP00015000842.2, ENSCGRT00015001079.2
-
XM_027408304.2 → XP_027264105.1 aggrecan core protein isoform X1
- UniProtKB/TrEMBL
- A0A9J7FN46, G3ICD5