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gpc5a glypican 5a [ Takifugu rubripes (torafugu) ]

Gene ID: 101079000, updated on 8-Mar-2024

Summary

Gene symbol
gpc5a
Gene description
glypican 5a
See related
Ensembl:ENSTRUG00000017234
Gene type
protein coding
RefSeq status
MODEL
Organism
Takifugu rubripes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Eupercaria; Tetraodontiformes; Tetradontoidea; Tetraodontidae; Takifugu
Orthologs
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Genomic context

See gpc5a in Genome Data Viewer
Location:
chromosome: 13
Exon count:
10
Annotation release Status Assembly Chr Location
103 current fTakRub1.2 (GCF_901000725.2) 13 NC_042297.1 (16856774..16926675)
101 previous assembly FUGU5 (GCF_000180615.1) 13 NC_018902.1 (13072737..13141561)

Chromosome 13 - NC_042297.1Genomic Context describing neighboring genes Neighboring gene microRNA mir-92-2 Neighboring gene microRNA mir-19b Neighboring gene glypican 6a Neighboring gene transfer RNA tyrosine (anticodon GUA) Neighboring gene LIM domain only protein 7-like

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in cell surface PubMed 
located_in collagen-containing extracellular matrix PubMed 
located_in extracellular region PubMed 
located_in plasma membrane PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Takifugu rubripes Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference fTakRub1.2 Primary Assembly

Genomic

  1. NC_042297.1 Reference fTakRub1.2 Primary Assembly

    Range
    16856774..16926675
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_029846180.1XP_029702040.1  glypican-5-like isoform X1

    UniProtKB/TrEMBL
    H2V4L4
    Related
    ENSTRUP00000044148.3, ENSTRUT00000044296.3
  2. XM_003969906.3XP_003969955.2  glypican-5-like isoform X2

    Related
    ENSTRUP00000056251.2, ENSTRUT00000053160.2
    Conserved Domains (1) summary
    pfam01153
    Location:12495
    Glypican
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