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LOC103022409 leucine-rich repeat transmembrane neuronal protein 4 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103022409, updated on 12-Sep-2024

Summary

Gene symbol
LOC103022409
Gene description
leucine-rich repeat transmembrane neuronal protein 4
See related
EnsemblRapid:ENSAMXG00025008710
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Also known as
lrrtm4
Orthologs
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Genomic context

See LOC103022409 in Genome Data Viewer
Location:
chromosome: 12
Exon count:
3
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 12 NC_064419.1 (15272526..15441167)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 6 NC_035902.1 (45200345..45382669, complement)

Chromosome 12 - NC_064419.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC125806162 Neighboring gene interleukin-17 receptor C Neighboring gene uncharacterized LOC125806212 Neighboring gene DiGeorge syndrome critical region gene 6

Genomic regions, transcripts, and products

General protein information

Preferred Names
leucine-rich repeat transmembrane neuronal protein 4
Names
leucine rich repeat transmembrane neuronal 4

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064419.1 Reference AstMex3_surface

    Range
    15272526..15441167
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007237211.4XP_007237273.3  leucine-rich repeat transmembrane neuronal protein 4 isoform X1

    UniProtKB/TrEMBL
    A0A8B9KMA5, W5LIL8
    Related
    ENSAMXP00025011991.1, ENSAMXT00025016507.1
    Conserved Domains (4) summary
    TIGR00864
    Location:281349
    PCC; polycystin cation channel protein
    COG4886
    Location:109311
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:6184
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:64119
    LRR_8; Leucine rich repeat
  2. XM_022670746.2XP_022526467.1  leucine-rich repeat transmembrane neuronal protein 4 isoform X2

    UniProtKB/TrEMBL
    A0A3B1JFS9, A0A8T2LHD9
    Conserved Domains (4) summary
    TIGR00864
    Location:281349
    PCC; polycystin cation channel protein
    COG4886
    Location:109311
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:6184
    LRR_RI; leucine-rich repeat [structural motif]
    pfam13855
    Location:64119
    LRR_8; Leucine rich repeat
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