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DGCR2 DiGeorge syndrome critical region gene 2 [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103111486, updated on 3-Dec-2024

Summary

Gene symbol
DGCR2
Gene description
DiGeorge syndrome critical region gene 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
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Genomic context

See DGCR2 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 1 NC_080162.1 (117600289..117667491, complement)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804055.1 (372677..437770, complement)

Chromosome 1 - NC_080162.1Genomic Context describing neighboring genes Neighboring gene protein FAM246A-like Neighboring gene carbonic anhydrase 15-like Neighboring gene testis specific serine kinase 1B Neighboring gene testis specific serine kinase 2

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane PubMed 

General protein information

Preferred Names
integral membrane protein DGCR2/IDD

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080162.1 Reference mEriEur2.1

    Range
    117600289..117667491 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016187157.2XP_016042643.1  integral membrane protein DGCR2/IDD isoform X4

    UniProtKB/TrEMBL
    A0A1S2ZKM3, A0A1S3W832
    Conserved Domains (2) summary
    cd03599
    Location:71224
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:228286
    VWC; von Willebrand factor (vWF) type C domain
  2. XM_007520770.3XP_007520832.1  integral membrane protein DGCR2/IDD isoform X5

    UniProtKB/TrEMBL
    A0A1S2ZKM3, A0A1S2ZKM5
    Conserved Domains (2) summary
    cd03599
    Location:71224
    CLECT_DGCR2_like; C-type lectin-like domain (CTLD) of the type found in DGCR2, an integral membrane protein deleted in DiGeorge Syndrome (DGS)
    smart00214
    Location:228286
    VWC; von Willebrand factor (vWF) type C domain
  3. XM_016187156.2XP_016042642.1  integral membrane protein DGCR2/IDD isoform X1

    UniProtKB/TrEMBL
    A0A1S2ZKM7, A0A1S3W8L0
    Conserved Domains (3) summary
    smart00214
    Location:269327
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:3066
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl02432
    Location:112265
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
  4. XM_007520768.3XP_007520830.1  integral membrane protein DGCR2/IDD isoform X2

    UniProtKB/TrEMBL
    A0A1S2ZKM0, A0A1S2ZKM7
    Conserved Domains (3) summary
    smart00214
    Location:269327
    VWC; von Willebrand factor (vWF) type C domain
    cd00112
    Location:3066
    LDLa; Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about ...
    cl02432
    Location:112265
    CLECT; C-type lectin (CTL)/C-type lectin-like (CTLD) domain
  5. XM_060195001.1XP_060050984.1  integral membrane protein DGCR2/IDD isoform X3

    UniProtKB/TrEMBL
    A0A1S2ZKM3
  6. XM_060195017.1XP_060051000.1  integral membrane protein DGCR2/IDD isoform X7

    UniProtKB/TrEMBL
    A0A1S2ZKM3
  7. XM_060195012.1XP_060050995.1  integral membrane protein DGCR2/IDD isoform X6

    UniProtKB/TrEMBL
    A0A1S2ZKM7
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