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Ly49si1l1 immunoreceptor Ly49si1 like 1 [ Rattus norvegicus (Norway rat) ]

Gene ID: 502907, updated on 9-Dec-2024

Summary

Official Symbol
Ly49si1l1provided by RGD
Official Full Name
immunoreceptor Ly49si1 like 1provided by RGD
Primary source
RGD:1584856
See related
AllianceGenome:RGD:1584856
Gene type
ncRNA
RefSeq status
MODEL
Organism
Rattus norvegicus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
Summary
Predicted to enable signaling receptor activity. Predicted to be involved in regulation of signal transduction. Predicted to be located in plasma membrane. Predicted to be active in cell surface. [provided by Alliance of Genome Resources, Dec 2024]
Expression
Biased expression in Spleen (RPKM 57.9), Thymus (RPKM 13.7) and 5 other tissues See more
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Genomic context

See Ly49si1l1 in Genome Data Viewer
Location:
4q42
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCr8 (GCF_036323735.1) 4 NC_086022.1 (165490186..165502401, complement)
RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 4 NC_051339.1 (163805956..163825355, complement)
106 previous assembly Rnor_6.0 (GCF_000001895.5) 4 NC_005103.4 (164105037..164127770, complement)

Chromosome 4 - NC_086022.1Genomic Context describing neighboring genes Neighboring gene immunoreceptor Ly49si3 like 1 Neighboring gene immunoreceptor Ly49si2 Neighboring gene immunoreceptor Ly49si4, pseudogene 1 Neighboring gene killer cell lectin-like receptor, subfamily A, member 17 Neighboring gene transfer RNA valine (anticodon AAC) 43

Genomic regions, transcripts, and products

Expression

  • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
  • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
  • BioProject: PRJNA238328
  • Publication: PMID 24510058
  • Analysis date: Mon Jun 6 17:44:12 2016

General gene information

Other Names

  • T-cell surface glycoprotein YE1/48-like
  • killer cell lectin-like receptor 5-like
  • killer cell lectin-like receptor 7
  • killer cell lectin-like receptor 8

Gene Ontology Provided by RGD

Function Evidence Code Pubs
enables carbohydrate binding  
Process Evidence Code Pubs
involved_in cell adhesion  
Component Evidence Code Pubs
located_in plasma membrane  

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCr8

Genomic

  1. NC_086022.1 Reference GRCr8

    Range
    165490186..165502401 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_010066280.1 RNA Sequence

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