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CDH16 cadherin 16 [ Bos taurus (domestic cattle) ]

Gene ID: 508777, updated on 30-Jan-2025

Summary

Official Symbol
CDH16provided by VGNC
Official Full Name
cadherin 16provided by VGNC
Primary source
VGNC:VGNC:27095
See related
BGD:BT15403; EnsemblRapid:ENSBTAG00070007102
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Bos taurus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
Orthologs
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Genomic context

See CDH16 in Genome Data Viewer
Location:
chromosome: 18
Exon count:
18
Annotation release Status Assembly Chr Location
RS_2024_12 current ARS-UCD2.0 (GCF_002263795.3) 18 NC_037345.1 (34613302..34623215, complement)

Chromosome 18 - NC_037345.1Genomic Context describing neighboring genes Neighboring gene carbonic anhydrase 7 Neighboring gene pyruvate dehydrogenase phosphatase catalytic subunit 2 Neighboring gene RRAD, Ras related glycolysis inhibitor and calcium channel regulator Neighboring gene cytosolic iron-sulfur assembly component 2B

Genomic regions, transcripts, and products

Genomic Sequence:
NC_037345.1 Chromosome 18 Reference ARS-UCD2.0 Primary Assembly

Expression

  • Project title: Dominette sequence data
  • BioProject: PRJNA294306
  • Analysis date: Tue Dec 17 08:57:05 2024

General gene information

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cadherin binding PubMed 
enables calcium ion binding PubMed 
Component Evidence Code Pubs
located_in adherens junction PubMed 
part_of catenin complex PubMed 
located_in plasma membrane PubMed 

General protein information

Preferred Names
cadherin-16
Names
cadherin 16, KSP-cadherin

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001015550.1NP_001015550.1  cadherin-16 precursor

    See identical proteins and their annotated locations for NP_001015550.1

    Status: PROVISIONAL

    Source sequence(s)
    BT020953
    UniProtKB/TrEMBL
    A0AAA9S7E9, Q5E9G7
    Related
    ENSBTAP00070009197.1, ENSBTAT00070016132.1
    Conserved Domains (2) summary
    cd11304
    Location:342445
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:65124
    CA; Cadherin repeats

RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2024_12

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ARS-UCD2.0 Primary Assembly

Genomic

  1. NC_037345.1 Reference ARS-UCD2.0 Primary Assembly

    Range
    34613302..34623215 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_010814441.4XP_010812743.1  cadherin-16 isoform X3

    UniProtKB/TrEMBL
    A0AAA9S7E9
    Conserved Domains (2) summary
    cd11304
    Location:342445
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:65124
    CA; Cadherin repeats
  2. XM_010814440.4XP_010812742.1  cadherin-16 isoform X2

    UniProtKB/TrEMBL
    A0AAA9S7E9
    Conserved Domains (2) summary
    cd11304
    Location:342445
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:65124
    CA; Cadherin repeats
  3. XM_005218493.5XP_005218550.1  cadherin-16 isoform X1

    See identical proteins and their annotated locations for XP_005218550.1

    UniProtKB/TrEMBL
    A0AAA9S7E9, Q5E9G7
    Related
    ENSBTAP00070009219.1, ENSBTAT00070016158.1
    Conserved Domains (2) summary
    cd11304
    Location:342445
    Cadherin_repeat; Cadherin tandem repeat domain
    smart00112
    Location:65124
    CA; Cadherin repeats
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