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AMIGO1 adhesion molecule with Ig like domain 1 [ Pan troglodytes (chimpanzee) ]

Gene ID: 739969, updated on 17-Aug-2024

Summary

Official Symbol
AMIGO1provided by VGNC
Official Full Name
adhesion molecule with Ig like domain 1provided by VGNC
Primary source
VGNC:VGNC:12981
Locus tag
CK820_G0054925
See related
Ensembl:ENSPTRG00000001053
Gene type
protein coding
RefSeq status
MODEL
Organism
Pan troglodytes
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Pan
Orthologs
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Genomic context

See AMIGO1 in Genome Data Viewer
Location:
chromosome: 1
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current NHGRI_mPanTro3-v2.0_pri (GCF_028858775.2) 1 NC_072398.2 (121980707..121986279)
RS_2023_04 previous assembly NHGRI_mPanTro3-v1.1-hic.freeze_pri (GCF_028858775.1) 1 NC_072398.1 (109313005..109318573, complement)

Chromosome 1 - NC_072398.2Genomic Context describing neighboring genes Neighboring gene G protein subunit alpha i3 Neighboring gene uncharacterized LOC107967629 Neighboring gene G protein-coupled receptor 61 Neighboring gene cytochrome b561 family member D1 Neighboring gene ataxin 7 like 2

Genomic regions, transcripts, and products

General gene information

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
located_in membrane PubMed 

General protein information

Preferred Names
amphoterin-induced protein 1
Names
AMIGO protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_028858775.2-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

Genomic

  1. NC_072398.2 Reference NHGRI_mPanTro3-v2.0_pri Primary Assembly

    Range
    121980707..121986279
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_054668577.2XP_054524552.1  amphoterin-induced protein 1

    UniProtKB/TrEMBL
    A0A2J8IMM8, A0A6D2WKQ3, H2PZK7
  2. XM_009427331.5XP_009425606.1  amphoterin-induced protein 1

    See identical proteins and their annotated locations for XP_009425606.1

    UniProtKB/TrEMBL
    A0A2J8IMM8, A0A6D2WKQ3, H2PZK7
    Related
    ENSPTRP00000001819.2
    Conserved Domains (3) summary
    smart00409
    Location:279358
    IG; Immunoglobulin
    COG4886
    Location:66242
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:6687
    LRR_RI; leucine-rich repeat [structural motif]
  3. XM_001150542.8XP_001150542.1  amphoterin-induced protein 1

    See identical proteins and their annotated locations for XP_001150542.1

    UniProtKB/TrEMBL
    A0A2J8IMM8, A0A6D2WKQ3, H2PZK7
    Conserved Domains (3) summary
    smart00409
    Location:279358
    IG; Immunoglobulin
    COG4886
    Location:66242
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:6687
    LRR_RI; leucine-rich repeat [structural motif]
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