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CBM13
Summary
- CAZy
- CBM13
- Family
- Carbohydrate-Binding Module Family 13
- Activities
-
- Modules of approx. 150 residues which always appear as a threefold internal repeat. The only apparent exception to this, xylanase II of Actinomadura sp. FC7 (GenBank U08894), is in fact not completely sequenced. These modules were first identified in several plant lectins such as ricin or agglutinin of Ricinus communis which bind galactose residues. The three-dimensional structure of a plant lectin has been determined and displays a pseudo-threefold symmetry in accord with the observed sequence threefold repeat. These modules have since been found in a number of other proteins of various functions including glycoside hydrolases and glycosyltransferases. While in the plant lectins this module binds mannose, binding to xylan has been demonstrated in the Streptomyces lividans xylanase A and arabinofuranosidase B. Binding to GalNAc has been shown for the corresponding module of GalNAc transferase 4. For the other proteins, the binding specificity of these modules has not been established. The pseudo three-fold symmetry of the CBM13 module has now been confirmed in the 3-D structure of the intact, two-domain, xylanase of Streptomyces olivaceoviridis.
Protein List
| GenBank | Organism | UniProt ID | Protein Name | Gene ID | Enzyme |
|---|---|---|---|---|---|
| QYA18700.1 | A0A8F8KQ20 | Agglutinin | |||
| QYA18570.1 | A0A8F8KT33 | Agglutinin | |||
| QYA18404.1 | A0A8F8KL79 | Hemagglutinin | |||
| QYA18544.1 | A0A8F8KQY1 | Agglutinin | |||
| CAA51311.1 | Q38196 | ANTP-33 protein | |||
| QHZ54134.1 | A0A6C0QMT3 | GlcNAc-binding protein A | |||
| BAE47782.1 | Q332E2 | Main hemagglutinin component HA-33 | 3772939 | ||
| BAA75077.1 | P0DPR1 | Main hemagglutinin component type D | |||
| AGN89341.1 | R9VWV6 | Toxin 1 | 16385287 | ||
| AXF39515.1 | A0A345ARR1 | Putative toxin | |||
| ALA12432.1 | A0A0K2CYC7 | Toxin | 26613494 | ||
| ALA12593.1 | A0A0K2CYN4 | Toxin | |||
| QKU33764.1 | A0A6N1NDW0 | Putative B-type lectin protein | |||
| QKU35006.1 | A0A6N1NTT4 | Putative B-type lectin protein | |||
| BAV62375.1 | A0A1E1ESZ9 | Putative B-type lectin protein | |||
| QKU35203.1 | A0A6N1NUY5 | Ricin B lectin domain-containing protein | |||
| BAV61387.1 | A0A1E1ESZ9 | Putative B-type lectin protein | |||
| QKU33955.1 | A0A6N1NF17 | Ricin B lectin domain-containing protein | |||
| AAV50560.1 | Q5UPX2 | Putative B-type lectin protein L288 | 9924903 | ||
| ADO18119.1 | E3VZN6 | Putative B-type lectin protein | 9924903 | ||
| AEJ34527.1 | E3VZN6 | Putative B-type lectin protein | 9924903 | ||
| QTF49199.1 | A0A8A5J1A1 | Ricin-type lectin protein | |||
| AMZ02737.1 | A0A165XE81 | Putative B-type lectin protein | |||
| AVL94831.1 | A0A2P1ELR1 | Ricin-type beta-trefoil domain protein | |||
| AHA45577.1 | V5L3N6 | Putative B-type lectin protein |
| GenBank | Organism | UniProt ID | Protein Name | Gene ID | Enzyme |
|---|---|---|---|---|---|
| AMY11942.1 | A0A143PTM7 | Intracellular endo-alpha-(1->5)-L-arabinanase | 3.2.1.99 | ||
| AKA59483.1 | A0A0E3JNP9 | Alpha-galactosidase | 3.2.1.22 | ||
| AHF26385.1 | W0FTE9 | Putative alpha-amylase | |||
| AHE14830.1 | V9Y3F8 | non-reducing end alpha-L-arabinofuranosidase | 3.2.1.55 | ||
| AQQ75288.1 | A0A1S5Y2E0 | non-reducing end alpha-L-arabinofuranosidase (Fragment) | 3.2.1.55 | ||
| QNO39518.1 | A0A7G9XVI2 | Arabinosidase | |||
| ALS90415.1 | A0A0U2ZQD2 | Ricin-type beta-trefoil lectin domain-like protein (Fragment) | |||
| APO33573.1 | A0A1L5KZR4 | Bacterial Ig-like domain (Group 4) (Fragment) | |||
| AXL05823.1 | A0A346AF11 | Beta-xylosidase | |||
| AQQ75061.1 | A0A1S5Y1T7 | GH16 CBM13 | |||
| AMP52080.1 | A0A127SPW7 | Ricin-type beta-trefoil lectin domain protein (Fragment) | |||
| APO33173.1 | A0A1L5KYL1 | Ricin-type beta-trefoil lectin domain-like protein (Fragment) | |||
| ALS89935.1 | A0A0U2ZP04 | Ricin-type beta-trefoil lectin domain protein (Fragment) | |||
| AXL05831.1 | A0A346AF19 | Ricin B lectin domain-containing protein | |||
| AGC71031.1 | L7VUS5 | Putative arabinofuranosidase | |||
| ATC63526.1 | A0A290QBC7 | Ricin B lectin domain-containing protein | |||
| ATC63124.1 | A0A290Q3P4 | Ricin B lectin domain-containing protein | |||
| AMP20189.1 | A0A191HTD5 | Ricin B lectin domain-containing protein | |||
| AMP20984.1 | A0A191HW04 | Ricin B lectin domain-containing protein | |||
| AMP20192.1 | A0A191HTE0 | Ricin B lectin domain-containing protein | |||
| QHU91202.1 | A0A857VAP1 | Ricin B lectin domain-containing protein | |||
| BCL79815.1 | A0A7I8EKU5 | galactosylceramidase | 3.2.1.46 | ||
| BCL82212.1 | A0A7I8EVI5 | Ricin-type beta-trefoil lectin domain protein | |||
| BCL79118.1 | A0A7I8ELJ1 | LanC_like and RICIN domain-containing protein | |||
| AYY13883.1 | A0A3G5T7N7 | Uncharacterized protein |
| GenBank | Organism | UniProt ID | Protein Name | Gene ID | Enzyme |
|---|---|---|---|---|---|
| QIB79924.1 | A0A6C0UWW0 | Family 43 glycosylhydrolase | 44085396 | ||
| QNO55654.1 | A0A7G9Z5X0 | Ricin B lectin domain-containing protein | |||
| AWB26668.1 | A0A2R4WYQ9 | Ricin B lectin domain-containing protein | |||
| AWB28252.1 | A0A2R4X387 | Ricin B lectin domain-containing protein | |||
| AKU09507.1 | A0A0K1IYA1 | Glycoside hydrolase family 43 | |||
| AWB28607.1 | A0A2R4X499 | Glycoside hydrolase family 43 | |||
| AKU09509.1 | A0A0K1IYI1 | Glycoside hydrolase family 43 | |||
| AWB26859.1 | A0A2R4WZ90 | PKD domain containing protein | |||
| QCC52345.1 | A0A4D6HFP5 | DUF1939 domain-containing protein | |||
| QCC52347.1 | A0A4D6HI21 | DUF1939 domain-containing protein | |||
| AUG46837.1 | A0A2H4ZWL4 | Alpha-glucosidase | |||
| QCC52346.1 | A0A4D6HGK0 | DUF1939 domain-containing protein | |||
| UPM44596.1 | A0A8U0A6W4 | beta-galactosidase | 3.2.1.23 | ||
| UPM44576.1 | A0A8U0A6U5 | endo-1,4-beta-xylanase | 3.2.1.8 | ||
| UPM44582.1 | A0A8U0A684 | RICIN domain-containing protein | |||
| UPM44808.1 | A0A8U0A8J2 | Family 43 glycosylhydrolase | |||
| UPM44918.1 | A0A8U0A8W2 | RICIN domain-containing protein | |||
| QCS45002.1 | A0A4P8WP58 | Glycoside hydrolase family 97 protein | |||
| UPM45035.1 | A0A8U0A7D4 | Family 43 glycosylhydrolase | |||
| QLH83664.1 | A0A7D5PBE9 | endo-1,4-beta-xylanase | 3.2.1.8 | ||
| QLK26794.1 | A0A7D6CQV4 | endo-1,4-beta-xylanase | 3.2.1.8 | ||
| QPV62799.1 | A0A7T3KV56 | endo-1,4-beta-xylanase | 3.2.1.8 | ||
| QLH78810.1 | A0A7D5T5V4 | endo-1,4-beta-xylanase | 3.2.1.8 | ||
| QRV17913.1 | A0A8T8E8F8 | Family 43 glycosylhydrolase | |||
| QLH81511.1 | A0A7D5T2W5 | Family 43 glycosylhydrolase |
| GenBank | Organism | UniProt ID | Protein Name | Gene ID | Enzyme |
|---|---|---|---|---|---|
| AIG55518.1 | A0A0A7CM02 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| AIG55614.1 | A0A0A7CMG7 | glucan endo-1,3-beta-D-glucosidase (Fragment) | 3.2.1.39 | ||
| AIG55519.1 | A0A0A7CM78 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| AIG55751.1 | A0A0A7CMI8 | beta-glucosidase | 3.2.1.21 | ||
| AIG55545.1 | A0A0A7CM53 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| AIG55619.1 | A0A0A7CMH2 | glucan endo-1,3-beta-D-glucosidase (Fragment) | 3.2.1.39 | ||
| AIG55423.1 | A0A0A7CLU2 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| AIG55595.1 | A0A0A7CMA4 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| AIG55485.1 | A0A0A7CLZ9 | Secreted protein | |||
| AIG55598.1 | A0A0A7CM81 | Secreted protein | |||
| AIG55540.1 | A0A0A7CM49 | Secreted protein | |||
| QBC18039.1 | A0A411J1T4 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| QBC18032.1 | A0A411J1T4 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| QBC18033.1 | A0A411J1X9 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| QBC18037.1 | A0A411J1X9 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| QBC18034.1 | A0A411J1T4 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| QBC18036.1 | A0A411J1X9 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| QBC18035.1 | A0A411J1X9 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| QBC18030.1 | A0A411J1X9 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| QBC18038.1 | A0A411J1T4 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| QBC18031.1 | A0A411J1X9 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| CCD28161.1 | H6S431 | glucan endo-1,3-beta-D-glucosidase (Fragment) | 3.2.1.39 | ||
| QBC18029.1 | A0A411J1X9 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| QBC18040.1 | A0A411J1T4 | glucan endo-1,3-beta-D-glucosidase | 3.2.1.39 | ||
| AIG56285.1 | A0A0A7CP76 | beta-glucosidase | 3.2.1.21 |
