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Glycan Structure Repository
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Glycoconjugate Repository
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Glycomics MS raw data Repository
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Glycomics MS Repository for glycan annotations from GlycoWorkbench
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SugarDrawer GlycanBuilder Glycan Converters GlycoMaple GlycomeAtlas LM-GlycomeAtlas GALAXY MCAW GlycoSim GRable
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Metadata for Data Resources

Category Source Last Updated
Alliance of Genome Resources
Alliance of Genome Resources July 29, 2024
CAZy
CAZy May 9, 2022
GlyCosmos Diseases
Alliance of Genome Resources July 29, 2024
GlyCosmos Diseases
DisGeNET July 29, 2024
GlyCosmos Diseases
Glyco-Disease Genes Database (GDGDB) January 25, 2017
DisGeNET
DisGeNET July 29, 2024
FlyGlycoDB
FlyGlycoDB March 25, 2024
GALAXY
GALAXY March 31, 2022
Glyco-Disease Genes Database (GDGDB)
Glyco-Disease Genes Database (GDGDB) January 25, 2017
GlycoGene Database (GGDB)
GlycoGene Database (GGDB) January 26, 2018
GlyCosmos Glycans
GlyTouCan August 18, 2024
GlycoBase
Glycobase April 18, 2024
GlycoEpitope
GlycoEpitope November 18, 2015
GlyCosmos Genes
FlyGlycoDB March 25, 2024
GlyCosmos Genes
GlycoGene Database (GGDB) January 26, 2018
GlyCosmos Genes
KEGG GENES Database September 20, 2023
GlyCosmos Genes
Plant GARDEN May 28, 2020
GlyCosmos Genes
UniProt July 8, 2024
GlyCosmos Glycolipids
LIPID MAPS Proteome Database (LMSD) June 16, 2024
GlycoNAVI Glycans
GlycoNAVI Glycans November 14, 2024
GlycoNAVI Lectins
GlycoNAVI Lectins November 14, 2024
GlycoNAVI Proteins
GlycoNAVI Proteins November 14, 2024
GlycoProtDB
GlycoProtDB October 1, 2021
GlyCosmos Glycoproteins
GlyConnect April 19, 2023
GlyCosmos Glycoproteins
GlycoProtDB October 1, 2021
GlyCosmos Glycoproteins
GlyGen June 4, 2024
GlyCosmos Glycoproteins
The O-GlcNAc Database June 3, 2024
GlyCosmos Glycoproteins
UniProt June 4, 2024
GlycoStore
GlycoStore July 24, 2024
GlyCOVID
PSICQUIC March 30, 2022
GlyCosmos Lectins
MCAW July 10, 2019
GlyCosmos Lectins
UniLectin June 14, 2023
GlyCosmos Lectins
UniProt June 6, 2024
GlyCosmos Lectins
Lectin Frontier DataBase (LfDB) April 6, 2018
GlyCosmos Lectins
CarboGrove June 14, 2023
Lectin Frontier DataBase (LfDB)
Lectin Frontier DataBase (LfDB) April 6, 2018
LIPID MAPS
LIPID MAPS Proteome Database (LMPD) June 19, 2024
MatrixDB
MatrixDB May 10, 2022
Microbial Genome Database (MBGD)
Microbial Genome Database (MBGD) October 23, 2024
Metaglynome
PMID: 37398549 May 15, 2023
Metaglynome
PMID: 34663219 May 15, 2023
Pathogen Adherence to Carbohydrate Database (PACDB)
Pathogen Adherence to Carbohydrate Database (PACDB) June 1, 2016
GlycoMaple
GlycoMaple (Human) April 1, 2020
GlycoMaple
GlycoMaple (Mouse) August 19, 2024
GlycomeAtlas
GlycomeAtlas November 7, 2018
GRable
Ver. 1.0 August 19, 2024
LM-GlycomeAtlas
Ver. 1.0 August 15, 2019
LM-GlycomeAtlas
Ver. 2.0 December 7, 2020
LM-GlycomeAtlas
Ver. 2.1 April 24, 2023
GlyCosmos Pathways
Reactome March 20, 2024
GlyCosmos Pathways
ECODAB April 1, 2019
Plant GARDEN
Plant Garden May 28, 2020
GlyCosmos Proteoglycans
UniProt November 20, 2024
Sugarbind
SugarBind October 4, 2022
Displaying all 58 entries
Title Graph Name Last Updated Number of Triples
Alliance of Genome Resources http://rdf.glycosmos.org/genomealliance 2024-07-29 171,693
CAZy http://rdf.glycosmos.org/cazy 2022-05-09 3,257,743
GlyCosmos Disease http://rdf.glycosmos.org/disease 2024-07-29 759,177
GlyCosmos Disease (PubChem) http://rdf.glycosmos.org/disease/pubchem 2024-04-17 13,502
Human Phenotype Ontology http://rdf.glycosmos.org/hpo 2023-07-07 1,034,098
DisGeNET http://rdf.glycosmos.org/disgenet 2024-07-29 724,310
FlyGlycoDB http://www.flyglycodb.org/fgdb 2024-03-25 9,166
GALAXY http://rdf.glycosmos.org/galaxy 2022-03-31 36,832
External Link http://rdf.glycosmos.org/glycans 2024-06-10 313,770
Motif http://rdf.glycosmos.org/glycans/motif_label 2022-04-11 1,118
Taxonomy http://rdf.glycosmos.org/glycans/taxon 2024-01-11 170,730
Trivialname http://rdf.glycosmos.org/glycans/trivialname 2022-03-14 5,657
MCAW http://rdf.glycosmos.org/mcaw_glycans 2019-07-10 145
GlycomeAtlas http://rdf.glycosmos.org/glycomeatlas 2018-11-07 6,012
PubMed http://rdf.glycosmos.org/pubmed 2022-01-26 66,377
Glycobase http://rdf.glycosmos.org/glycans/glycobase 2024-04-18 5,448
GlycoStore http://rdf.glycosmos.org/glycans/glycostore 2024-07-24 15,084
GlyCosmos Genes http://rdf.glycosmos.org/glycogenes 2024-07-08 10,987,322
HGNC http://rdf.glycosmos.org/hgnc 2023-05-02 42,834
ChIP-Atlas Colocalization http://rdf.glycosmos.org/chipatlas_colo 2022-02-09 17,979
ChIP-Atlas Target Genes http://rdf.glycosmos.org/chipatlas_genes 2022-02-09 53,056
Rhea http://rdf.glycosmos.org/Rhea 2024-05-29 5,339,629
LIPID MAPS Proteome Database (LMSD) http://rdf.glycosmos.org/glycolipid 2024-06-16 62,514
SwissLipids http://rdf.glycosmos.org/swisslipids 2024-06-18 1,955
GlyCosmos Glycoproteins http://rdf.glycosmos.org/glycoprotein 2024-06-06 9,300,231
MCAW http://glycosmos.org/uniprot2mcaw 2019-07-10 228
GlyCOVID http://doi.org/10.3390/pathogens10040438 2022-03-14 36,955
PSICQUIC http://rdf.glycosmos.org/psicquic 2022-03-30 24,013,074
GlyCOVID (PubChem) http://rdf.glycosmos.org/glycovid_pubchem 2022-03-14 2,769,526
GlyCosmos Lectins http://rdf.glycosmos.org/lectin 2024-06-06 101,990
CarboGrove http://rdf.glycosmos.org/carbogrove 2023-06-14 1,312,355
LIPID MAPS Proteome Database (LMPD) http://rdf.glycosmos.org/lipidmaps_gene 2024-06-19 57,339
MatrixDB http://rdf.glycosmos.org/matrixdb 2022-05-10 209,674
Plant Garden http://rdf.glycosmos.org/plantgarden 2020-05-28 246,667
SugarBind http://rdf.glycosmos.org/sugarbind 2022-10-04 19,649
GyCosmos Pathways http://rdf.glycosmos.org/pathway 2024-03-20 882,136
GyCosmos Pathways (inference) http://rdf.glycosmos.org/pathway/inference 2024-03-20 326,404
Reactome http://rdf.glycosmos.org/pathway_reactome_v88 2024-03-20 20,139,570
ECODAB http://rdf.glycosmos.org/Pathways_LPS 2019-04-01 43,431
The Human Protein Atlas http://rdf.glycosmos.org/HPA 2023-06-19 4,820,803
KEGG http://rdf.glycosmos.org/kegg 2024-02-07 2,029,561
Glyco-Disease Genes Database (GDGDB) http://rdf.glycoinfo.org/gdgdb 2017-01-25 3,530
GlycoGene Database (GGDB) http://rdf.glycoinfo.org/ggdb 2018-01-26 85,917
GGDonto http://rdf.glycoinfo.org/ggdonto 2016-09-01 39,518
GlycoProtDB http://rdf.glycoinfo.org/gpdb 2021-10-01 3,021,719
GlycoProtDB2GlyTouCan http://rdf.glycoinfo.org/gpdb2gtc 2018-12-04 1,744
Lectin Frontier DataBase (LfDB) http://rdf.glycoinfo.org/lfdb 2018-04-06 266,464
Pathogen Adherence to Carbohydrate Database (PACDB) http://rdf.glycoinfo.org/paconto 2016-06-01 82,435
GlycoEpitope http://rdf.glycoinfo.org/glycoepitope 2015-11-18 30,150
PubChem http://rdf.glycosmos.org/pubchem 2024-03-26 23,208,157
DDBJ taxonomy http://ddbj.nig.ac.jp/ontologies/taxonomy/ 2024-03-26 36,940,334
Disease Ontology http://purl.obolibrary.org/obo/doid 2024-03-28 267,663
Gene Ontology http://purl.obolibrary.org/obo/go.owl 2023-11-15 1,423,945
Uber-anatomy ontology http://purl.obolibrary.org/obo/uberon 2023-06-27 1,101,004
UBERON (Subset for GlycomeAtlas) http://rdf.glycosmos.org/uberon 2023-06-27 48,853
MONDO Disease Ontology http://rdf.glycosmos.org/mondo 2024-04-02 2,485,806
Semanticscience Integrated Ontology http://semanticscience.org/ontology/sio.owl 2023-03-26 15,734
Evidence and Conclusion Ontology http://purl.obolibrary.org/obo/eco.owl 2024-04-15 74,754
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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

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Last updated: August 19, 2024