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Category Data Updated Size File
GlyCosmos Genes
List of all GlyCosmos Genes data.
Gene Symbol Alias symbol Gene ID GGDB ID FGDB ID KEGG ID LM ID DO ID DO Term Species Taxonomy ID
July 30, 2024 32.24 MB Download (.csv)
GlycoGene Database (GGDB)
List of genes associated with glycan synthesis, related glycans and literature in the GlycoGene Database (GGDB).
Gene ID Gene Symbol GGDB ID Reaction Acceptor Product PubMed
January 25, 2018 72.67 KB Download (.csv)
GlyCosmos Glycoproteins
List of all GlyCosmos Glycoproteins data.
UniProt ID Protein Name Gene Symbol Alias Symbols Organism No. of Glycosylation Sites GlyTouCan IDs DO ID DO Term
July 30, 2024 13.69 MB Download (.csv)
GlyCosmos Glycoproteins
List of modified glycans of GlyCosms Glycoproteins.
Protein Name UniProt ID Organism Site GlyTouCan IDs Source DB
June 6, 2024 15.74 MB Download (.csv)
GlyCosmos Glycoproteins
List of the No. of Glycosylation Sites and No. of GlyTouCan IDs in GlyCosms glycoprotein.
UniProt ID UniProt ID Glycosylation information
June 6, 2024 5.45 MB Download (.tsv)
GlyCosmos Lectins
List of all GlyCosmos Lectins data.
GlyCosmos Lectin Number Lectin Name Short name UniProt ID PDB IDs LfDB ID Monosaccharide Specificity Organism Taxonomy ID MCAW IDs
June 5, 2024 537.11 KB Download (.csv)
GlyCosmos Lectins
List of lectins and high affinity glycans in the Lectin Frontier DataBase (LfDB).
GlyCosmos Lectin Number LfDB ID Short name Pfam Labels Specificities Organism GlyTouCan ID Value
June 5, 2024 262.8 KB Download (.csv)
GlyCosmos Lectins
List of lectins and high affinity glycans in the CarboGrove.
GlyCosmos Lectin Number UniProt ID ResultID DataID DataSource Provider Concentration GlyTouCan ID BindingIntensity Stdev
June 5, 2024 15.12 MB Download (.csv)
GlyCosmos Glycolipids
List of all GlyCosmos Glycolipids data.
Category Main Class Sub Class LM ID(LIPID MAPS) Common Name LIPIDBANK ID KEGG ID PubChem CID CHEBI ID Exact Mass Formula
June 16, 2024 1.55 MB Download (.csv)
GlyCosmos Glycans
List of all GlyCosmos Glycans data.
Accession Number IUPAC Condensed WURCS Monoisotopic mass Motif name(s) Subsumption ChEBI PubChem CID Taxonomy GlycomeAtlas(Taxonomy:Tissue(UBERON ID))
August 18, 2024 73.52 MB Download (.csv)
GlyCosmos Glycans
List of glycans and subsumption level.
WURCS(parent) GlyTouCan(parent) SubsumptionLevel(parent) WURCS(child) GlyTouCan(child) SubsumptionLevel(child)
August 18, 2024 94.35 MB Download (.csv)
GlyCosmos Glycans
List of glycans and site of localization in the GlycomeAtlas.
GlyTouCan ID Taxonomy Taxonomy ID Tissue DOI PMID
July 31, 2023 68.04 KB Download (.csv)
GlyCosmos Glycans
List of glycans and organism. This list contains the results obtained by inference.
GlyTouCan ID Taxonomy Taxonomy ID Rank Evidence Evidence id Annotation
March 7, 2024 20.23 MB Download (.csv)
GlyCosmos Glycans
List of glycans and core proteins.
GlyTouCan ID UniProt IDs of core proteins
June 5, 2024 610.42 KB Download (.csv)
GlyCosmos Glycans
List of GlyTouCan ID and WURCS.
GlyTouCan ID WURCS
August 18, 2024 52.57 MB Download (.csv)
GlyCosmos Glycans
List of archived GlyTouCan IDs.
ArchiveNumber AccessionNumber
August 18, 2024 17.21 KB Download (.csv)
GlyCosmos Glycans
List of archived GlyTouCan IDs and replaced GlyTouCan IDs.
ArchiveNumber
August 18, 2024 31.11 KB Download (.csv)
Glycan Images
SNFG PNG image files
August 18, 2024 912.14 MB Download (.zip)
Glycan Images
SNFG SVG image files
August 18, 2024 807.98 MB Download (.zip)
GlyCosmos Pathways
List of all GlyCosmos Pathways data.
Reactome ID
March 20, 2024 144.52 KB Download (.csv)
GlyCosmos Pathways
List of pathways to which glycoproteins are associated and glycoproteins .
Reactome ID Glycoprotein
March 20, 2024 1.23 MB Download (.csv)
GlyCosmos Pathways
List of pathways to which glycan are associated and glycans.
Reactome ID KEGG ChEBI GlyTouCan
March 20, 2024 27.67 KB Download (.csv)
GlyCosmos Diseases
List of all GlyCosmos Diseases data.
Disease ID Disease Name Gene Symbol Gene ID
June 27, 2024 1.77 MB Download (.csv)
Glyco-Disease Genes Database (GDGDB)
List of glycan-related diseases and their responsible genes in the Glyco-Disease Genes Database (GDGDB).
Concept UI Disease Name Gene Symbol Alias Disease Name Disease Type UniProt ID MeSH OMIM DO
April 3, 2024 27.54 KB Download (.csv)
Glyco-Disease Genes Database (GDGDB)
List of genes, glycan-related diseases and publication in the Glyco-Disease Genes Database (GDGDB).
Gene ID Gene Symbol Concept UI PubMed
January 24, 2017 6.9 KB Download (.csv)

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International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Contact: support@glycosmos.org

This work is licensed under Creative Commons Attribution 4.0 International


GlyCosmos Portal v4.0.0

Last updated: August 19, 2024