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prolyl 3-hydroxylase family member 4 (inactive)

Summary

Gene Symbol

P3H4

Organism

Homo sapiens (human)

External Links

NCBI Gene

10609

PubChem

10609

Alliance of Genome Resources

HGNC:16946

JoGo

P3H4

TogoVar

P3H4

Annotation

Keyword

Direct protein sequencing
Endoplasmic reticulum
Glycoprotein
Proteomics identification
Reference proteome
Signal

Proteins

Displaying 1 entry
UniProt	Protein Name
Q92791	Leprecan-like protein 4 Nucleolar autoantigen No55 Prolyl 3-hydroxylase family member 4 Synaptonemal complex protein SC65

Annotation information from UniProt.

Gene Ontology (GO)

Displaying entries **1 - 5** of 6 in total

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GO Term	Evidence Code	PMID
synaptonemal complex assembly	TAS	8862517
peptidyl-lysine hydroxylation	ISS
collagen fibril organization	ISS
collagen fibril organization	IBA
collagen biosynthetic process	ISS

GO Hierarchy

biological process

metabolic process [inference]

nitrogen compound metabolic process [inference]

organonitrogen compound metabolic process [inference]

protein metabolic process [inference]

protein modification process [inference]

protein hydroxylation [inference]

peptidyl-lysine hydroxylation

peptidyl-amino acid modification [inference]

peptidyl-lysine modification [inference]

peptidyl-lysine hydroxylation

biosynthetic process [inference]

collagen biosynthetic process

collagen metabolic process [inference]

collagen biosynthetic process

primary metabolic process [inference]

protein metabolic process [inference]

protein modification process [inference]

protein hydroxylation [inference]

peptidyl-lysine hydroxylation

peptidyl-amino acid modification [inference]

peptidyl-lysine modification [inference]

peptidyl-lysine hydroxylation

organic substance metabolic process [inference]

macromolecule metabolic process [inference]

protein metabolic process [inference]

protein modification process [inference]

protein hydroxylation [inference]

peptidyl-lysine hydroxylation

peptidyl-amino acid modification [inference]

peptidyl-lysine modification [inference]

peptidyl-lysine hydroxylation

macromolecule modification [inference]

protein modification process [inference]

protein hydroxylation [inference]

peptidyl-lysine hydroxylation

peptidyl-amino acid modification [inference]

peptidyl-lysine modification [inference]

peptidyl-lysine hydroxylation

organonitrogen compound metabolic process [inference]

protein metabolic process [inference]

protein modification process [inference]

protein hydroxylation [inference]

peptidyl-lysine hydroxylation

peptidyl-amino acid modification [inference]

peptidyl-lysine modification [inference]

peptidyl-lysine hydroxylation

cellular process [inference]

cell cycle process [inference]

meiotic cell cycle process [inference]

chromosome organization involved in meiotic cell cycle [inference]

synaptonemal complex assembly

cellular component organization or biogenesis [inference]

cellular component organization [inference]

organelle organization [inference]

chromosome organization [inference]

chromosome organization involved in meiotic cell cycle [inference]

synaptonemal complex assembly

synaptonemal complex organization [inference]

synaptonemal complex assembly

cellular component assembly [inference]

synaptonemal complex assembly

extracellular structure organization [inference]

extracellular matrix organization [inference]

collagen fibril organization

external encapsulating structure organization [inference]

extracellular matrix organization [inference]

collagen fibril organization

supramolecular fiber organization [inference]

collagen fibril organization

reproductive process [inference]

meiotic cell cycle process [inference]

chromosome organization involved in meiotic cell cycle [inference]

synaptonemal complex assembly

multicellular organismal process [inference]

tissue remodeling [inference]

bone remodeling

Displaying entries **1 - 5** of 7 in total

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GO Term	Evidence Code	PMID
condensed nuclear chromosome	TAS	8862517
synaptonemal complex	TAS	8862517
nucleolus	TAS	8862517
endoplasmic reticulum	IDA	23959653
endoplasmic reticulum	IBA

GO Hierarchy

cellular component

protein-containing complex [inference]

catalytic complex

cellular anatomical entity [inference]

organelle [inference]

membrane-bounded organelle [inference]

intracellular membrane-bounded organelle

endoplasmic reticulum

non-membrane-bounded organelle [inference]

intracellular non-membrane-bounded organelle [inference]

chromosome [inference]

nuclear chromosome [inference]

condensed nuclear chromosome

condensed chromosome [inference]

condensed nuclear chromosome

nucleolus

intracellular organelle [inference]

intracellular membrane-bounded organelle

endoplasmic reticulum

intracellular non-membrane-bounded organelle [inference]

chromosome [inference]

nuclear chromosome [inference]

condensed nuclear chromosome

condensed chromosome [inference]

condensed nuclear chromosome

nucleolus

synaptonemal structure [inference]

synaptonemal complex

Displaying 1 entry
GO Term	Evidence Code	PMID
collagen binding	IBA

GO Hierarchy

molecular function

binding [inference]

protein-containing complex binding [inference]

collagen binding

Gene Ontology information from NCBI Gene and UniProt.

OrthoDB (Group)

Group level

Eukaryota

Group Name

cartilage associated protein

Functional Category

O: Posttranslational modification, protein turnover, chaperones
Q: Secondary metabolites biosynthesis, transport and catabolism
T: Signal transduction mechanisms

Displaying **all 2** entries
Gene Ontology
collagen binding
collagen fibril organization

Displaying 1 entry
InterPro
Tetratricopeptide-like helical domain superfamily

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Guidelines

Summary

External Links

Annotation

OrthoDB (Group)

International Collaboration

Acknowledgements