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prolyl 3-hydroxylase family member 4 (inactive)

Summary

Gene Symbol

P3H4

Organism

Homo sapiens (human)

External Links

NCBI Gene

10609

PubChem

10609

Alliance of Genome Resources

HGNC:16946

Annotation

Keyword

Direct protein sequencing
Endoplasmic reticulum
Glycoprotein
Reference proteome
Signal

Proteins

Displaying 1 entry
UniProt	Protein Name
Q92791	Leprecan-like protein 4 Nucleolar autoantigen No55 Prolyl 3-hydroxylase family member 4 Synaptonemal complex protein SC65

Annotation information from UniProt.

Gene Ontology (GO)

Displaying **all 5** entries
GO Term	Evidence Code	PMID
synaptonemal complex assembly	TAS	8862517
collagen biosynthetic process	ISS
collagen fibril organization	IBA ISS
peptidyl-lysine hydroxylation	ISS
bone remodeling	ISS

GO Hierarchy

biological process

metabolic process [inference]

nitrogen compound metabolic process [inference]

organonitrogen compound metabolic process [inference]

protein metabolic process [inference]

protein modification process [inference]

protein hydroxylation [inference]

peptidyl-lysine hydroxylation

peptidyl-amino acid modification [inference]

peptidyl-lysine modification [inference]

peptidyl-lysine hydroxylation

biosynthetic process [inference]

collagen biosynthetic process

collagen metabolic process [inference]

collagen biosynthetic process

primary metabolic process [inference]

protein metabolic process [inference]

protein modification process [inference]

protein hydroxylation [inference]

peptidyl-lysine hydroxylation

peptidyl-amino acid modification [inference]

peptidyl-lysine modification [inference]

peptidyl-lysine hydroxylation

organic substance metabolic process [inference]

macromolecule metabolic process [inference]

protein metabolic process [inference]

protein modification process [inference]

protein hydroxylation [inference]

peptidyl-lysine hydroxylation

peptidyl-amino acid modification [inference]

peptidyl-lysine modification [inference]

peptidyl-lysine hydroxylation

macromolecule modification [inference]

protein modification process [inference]

protein hydroxylation [inference]

peptidyl-lysine hydroxylation

peptidyl-amino acid modification [inference]

peptidyl-lysine modification [inference]

peptidyl-lysine hydroxylation

organonitrogen compound metabolic process [inference]

protein metabolic process [inference]

protein modification process [inference]

protein hydroxylation [inference]

peptidyl-lysine hydroxylation

peptidyl-amino acid modification [inference]

peptidyl-lysine modification [inference]

peptidyl-lysine hydroxylation

cellular process [inference]

cell cycle process [inference]

meiotic cell cycle process [inference]

chromosome organization involved in meiotic cell cycle [inference]

synaptonemal complex assembly

cellular component organization or biogenesis [inference]

cellular component organization [inference]

organelle organization [inference]

chromosome organization [inference]

chromosome organization involved in meiotic cell cycle [inference]

synaptonemal complex assembly

synaptonemal complex organization [inference]

synaptonemal complex assembly

cellular component assembly [inference]

synaptonemal complex assembly

extracellular structure organization [inference]

extracellular matrix organization [inference]

collagen fibril organization

external encapsulating structure organization [inference]

extracellular matrix organization [inference]

collagen fibril organization

supramolecular fiber organization [inference]

collagen fibril organization

reproductive process [inference]

meiotic cell cycle process [inference]

chromosome organization involved in meiotic cell cycle [inference]

synaptonemal complex assembly

multicellular organismal process [inference]

tissue remodeling [inference]

bone remodeling

Displaying entries **1 - 5** of 6 in total

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GO Term	Evidence Code	PMID
catalytic complex	IEA
intracellular membrane-bounded organelle	IDA
synaptonemal complex	TAS	8862517
endoplasmic reticulum	IBA IDA	23959653
condensed nuclear chromosome	TAS	8862517

GO Hierarchy

cellular component

protein-containing complex [inference]

catalytic complex

cellular anatomical entity [inference]

organelle [inference]

membrane-bounded organelle [inference]

intracellular membrane-bounded organelle

endoplasmic reticulum

non-membrane-bounded organelle [inference]

intracellular non-membrane-bounded organelle [inference]

chromosome [inference]

nuclear chromosome [inference]

condensed nuclear chromosome

condensed chromosome [inference]

condensed nuclear chromosome

nucleolus

intracellular organelle [inference]

intracellular membrane-bounded organelle

endoplasmic reticulum

intracellular non-membrane-bounded organelle [inference]

chromosome [inference]

nuclear chromosome [inference]

condensed nuclear chromosome

condensed chromosome [inference]

condensed nuclear chromosome

nucleolus

synaptonemal structure [inference]

synaptonemal complex

Displaying 1 entry
GO Term	Evidence Code	PMID
collagen binding	IBA

GO Hierarchy

molecular function

binding [inference]

protein-containing complex binding [inference]

collagen binding

Gene Ontology information from NCBI Gene and UniProt.

OrthoDB (Group)

Group level

Eukaryota

Group Name

cartilage associated protein

Functional Category

G: Carbohydrate transport and metabolism
L: Replication, recombination and repair
M: Cell wall/membrane/envelope biogenesis

Displaying **all 2** entries
Gene Ontology
collagen binding
collagen fibril organization

Displaying 1 entry
InterPro
Tetratricopeptide-like helical domain superfamily

Ortholog

Displaying entries **1 - 10** of 66 in total

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Species	Gene ID	OrthoDB	Alliance of Genome Resources	Orthologous MAtrix
Rattus norvegicus	59101		RGD:620767	RATNO03406
Mus musculus	66180		MGI:1913430	MOUSE03810
Caenorhabditis elegans	178435		WB:WBGene00013531
Xenopus laevis	447039		Xenbase:XB-GENE-6254573
Danio rerio	570779		ZFIN:ZDB-GENE-030131-1599	DANRE15332
Xenopus tropicalis	595018		Xenbase:XB-GENE-1007100
Canis lupus familiaris	607731			CANLF18722
Macaca mulatta	705030			MACMU14326
Pan troglodytes	741670	9598_0:00449d
Bos taurus	788823			BOVIN13349

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

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Summary

External Links

Annotation

OrthoDB (Group)

International Collaboration

Acknowledgements