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jumonji domain containing 1C

Summary

Gene Symbol

Jmjd1c

Organism

Mus musculus (house mouse)

External Links

NCBI Gene

108829

PubChem

108829

Alliance of Genome Resources

MGI:1918614

Annotation

Keyword

Chromatin regulator
Dioxygenase
Direct protein sequencing
Iron
Isopeptide bond
Nucleus
Phosphoprotein
Proteomics identification
Reference proteome
Transcription regulation
Ubl conjugation
Zinc-finger

Proteins

Displaying **all 3** entries
UniProt	Protein Name
G3UZM1
Q69ZK6	Jumonji domain-containing protein 1C
A0A0A0MQ98

Annotation information from UniProt.

Gene Ontology (GO)

Displaying entries **1 - 5** of 8 in total

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GO Term	Evidence Code	PMID
epithelial cell morphogenesis	IMP	24006281
chromatin remodeling	IEA
regulation of transcription by RNA polymerase II	IBA
male gonad development	IMP	24006281
male germ-line stem cell population maintenance	IMP	24006281

GO Hierarchy

biological process

cellular process [inference]

cellular component organization or biogenesis [inference]

cellular component organization [inference]

protein-containing complex organization [inference]

protein-DNA complex organization [inference]

chromatin organization [inference]

chromatin remodeling

reproductive process [inference]

developmental process involved in reproduction [inference]

reproductive structure development [inference]

gonad development [inference]

male gonad development

seminiferous tubule development

multicellular organismal process [inference]

stem cell population maintenance [inference]

germ-line stem cell population maintenance [inference]

male germ-line stem cell population maintenance

developmental process [inference]

developmental process involved in reproduction [inference]

reproductive structure development [inference]

gonad development [inference]

male gonad development

seminiferous tubule development

anatomical structure morphogenesis [inference]

cell morphogenesis [inference]

epithelial cell morphogenesis

anatomical structure development [inference]

tube development [inference]

seminiferous tubule development

animal organ development [inference]

gonad development [inference]

male gonad development

reproductive structure development [inference]

gonad development [inference]

male gonad development

seminiferous tubule development

maintenance of cell number

stem cell population maintenance [inference]

germ-line stem cell population maintenance [inference]

male germ-line stem cell population maintenance

biological phase [inference]

reproductive senescence

biological regulation [inference]

regulation of biological process [inference]

regulation of metabolic process [inference]

regulation of biosynthetic process [inference]

regulation of cellular biosynthetic process [inference]

regulation of macromolecule biosynthetic process [inference]

regulation of gene expression [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of RNA biosynthetic process [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of cellular metabolic process [inference]

regulation of nucleobase-containing compound metabolic process [inference]

regulation of RNA metabolic process [inference]

regulation of RNA biosynthetic process [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of cellular biosynthetic process [inference]

regulation of macromolecule biosynthetic process [inference]

regulation of gene expression [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of RNA biosynthetic process [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of nitrogen compound metabolic process [inference]

regulation of nucleobase-containing compound metabolic process [inference]

regulation of RNA metabolic process [inference]

regulation of RNA biosynthetic process [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of macromolecule metabolic process [inference]

regulation of macromolecule biosynthetic process [inference]

regulation of gene expression [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of RNA biosynthetic process [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of RNA metabolic process [inference]

regulation of RNA biosynthetic process [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of primary metabolic process [inference]

regulation of nucleobase-containing compound metabolic process [inference]

regulation of RNA metabolic process [inference]

regulation of RNA biosynthetic process [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of cellular process [inference]

regulation of cellular metabolic process [inference]

regulation of nucleobase-containing compound metabolic process [inference]

regulation of RNA metabolic process [inference]

regulation of RNA biosynthetic process [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of cellular biosynthetic process [inference]

regulation of macromolecule biosynthetic process [inference]

regulation of gene expression [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

regulation of RNA biosynthetic process [inference]

regulation of DNA-templated transcription [inference]

regulation of transcription by RNA polymerase II

Displaying **all 3** entries
GO Term	Evidence Code	PMID
histone deacetylase complex	IBA
chromatin	IBA
nucleus	IEA

GO Hierarchy

cellular component

protein-containing complex [inference]

protein-DNA complex [inference]

chromatin

nuclear protein-containing complex [inference]

histone deacetylase complex

catalytic complex [inference]

histone deacetylase complex

cellular anatomical entity [inference]

organelle [inference]

membrane-bounded organelle [inference]

intracellular membrane-bounded organelle [inference]

nucleus

intracellular organelle [inference]

intracellular membrane-bounded organelle [inference]

nucleus

Displaying entries **1 - 5** of 7 in total

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GO Term	Evidence Code	PMID
transcription coregulator activity	IBA
zinc ion binding	IEA
chromatin DNA binding	IBA
histone H3K9 demethylase activity	IBA
histone H3K9 demethylase activity	IEA

GO Hierarchy

molecular function

catalytic activity [inference]

oxidoreductase activity [inference]

dioxygenase activity

demethylase activity [inference]

protein demethylase activity [inference]

histone demethylase activity [inference]

histone H3 demethylase activity [inference]

histone H3K9 demethylase activity

catalytic activity, acting on a protein [inference]

protein demethylase activity [inference]

histone demethylase activity [inference]

histone H3 demethylase activity [inference]

histone H3K9 demethylase activity

histone modifying activity [inference]

histone demethylase activity [inference]

histone H3 demethylase activity [inference]

histone H3K9 demethylase activity

binding [inference]

ion binding [inference]

cation binding [inference]

metal ion binding

transition metal ion binding [inference]

zinc ion binding

protein-containing complex binding [inference]

chromatin binding [inference]

chromatin DNA binding

organic cyclic compound binding [inference]

nucleic acid binding [inference]

DNA binding [inference]

chromatin DNA binding

transcription regulator activity [inference]

transcription coregulator activity

Gene Ontology information from NCBI Gene and UniProt.

OrthoDB (Group)

Group level

Eukaryota

Group Name

probable JmjC domain-containing histone demethylation protein 2C isoform a

Functional Category

E: Amino acid transport and metabolism
J: Translation, ribosomal structure and biogenesis
T: Signal transduction mechanisms

Displaying **all 4** entries
Gene Ontology
chromatin DNA binding
demethylation
histone H3K9 demethylase activity
metal ion binding

Displaying 1 entry
InterPro
Histone demethylase JHDM2-like

Ortholog

Displaying entries **1 - 10** of 92 in total

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Species	Gene ID	Alliance of Genome Resources	Orthologous MAtrix
Drosophila melanogaster	51780	FB:FBgn0037703
Drosophila melanogaster	55818	FB:FBgn0037703
Drosophila melanogaster	104263	FB:FBgn0037703
Xenopus tropicalis	108829	Xenbase:XB-GENE-1008867
Rattus norvegicus	171120		RATNO22162
Homo sapiens	221037	Xenbase:XB-GENE-1008867	HUMAN01315
Drosophila melanogaster	277250	FB:FBgn0037703
Pan troglodytes	450489		PANTR00728
Canis lupus familiaris	479221		CANLF14596
Danio rerio	558436		DANRE03610