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Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
collagen, type XVIII, alpha 1
Summary
- Gene Symbol
-
- Col18a1
- Organism
- Mus musculus (house mouse)
Annotation
- Keyword
-
- 3D-structure
- Alternative promoter usage
- Alternative splicing
- Basement membrane
- Cell adhesion
- Collagen
- Direct protein sequencing
- Disulfide bond
- Hydroxylation
- Metal-binding
- Phosphoprotein
- Proteoglycan
- Proteomics identification
- Reference proteome
- Repeat
- Signal
- Zinc
- Proteins
Gene Ontology (GO)
| GO Term | Evidence Code | PMID |
|---|---|---|
| notochord development | ||
| blood vessel endothelial cell migration | ||
| collagen fibril organization | ||
| endothelial cell morphogenesis | ||
| endothelial cell apoptotic process |
GO Hierarchy
| GO Term | Evidence Code | PMID |
|---|---|---|
| collagen-containing extracellular matrix | ||
| basement membrane | ||
| collagen trimer | ||
| extracellular space |
| GO Term | Evidence Code | PMID |
|---|---|---|
| protein binding | ||
| metal ion binding | ||
| identical protein binding | ||
| extracellular matrix structural constituent conferring tensile strength |
GO Hierarchy
OrthoDB (Group)
- Group level
- Rodentia
- Group Name
- collagen alpha-1(XVIII) chain
- Functional Category
-
- D: Cell cycle control, cell division, chromosome partitioning
- J: Translation, ribosomal structure and biogenesis
- T: Signal transduction mechanisms
| Gene Ontology |
|---|
| angiogenesis |
| endothelial cell morphogenesis |
| extracellular matrix organization |
| extracellular matrix structural constituent conferring tensile strength |
Disease
- Disease Ontology
| DO ID | Disease Name | Source |
|---|---|---|
| DOID:0050700 | cardiomyopathy | |
| DOID:0060680 | pigment dispersion syndrome | |
| DOID:10808 | gastric ulcer | |
| DOID:12930 | dilated cardiomyopathy | |
| DOID:1405 | primary angle-closure glaucoma | |
| DOID:423 | myopathy | |
| DOID:684 | hepatocellular carcinoma | |
| DOID:699 | mitochondrial myopathy | |
| DOID:8577 | ulcerative colitis |
Ortholog
| Species | Gene ID | OrthoDB | Alliance of Genome Resources | Orthologous MAtrix |
|---|---|---|---|---|
| 38769 | FB:FBgn0260660 | |||
| 80781 | HGNC:2195 | HUMAN58959 | ||
| 85251 | 10116_1:005371 | RGD:70936 | RATNO21834 | |
| 172678 | WB:WBGene00000527 | |||
| 394845 | Xenbase:XB-GENE-941368 | |||
| 474050 | PANTR25848 | |||
| 508076 | BOVIN15517 | |||
| 564123 | ZFIN:ZDB-GENE-030516-3 | DANRE44728 | ||
| 721919 | MACMU30666 | |||
| 100055712 | HORSE24875 |
