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Repository for lectin-assisted multimodality data
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MIRAGE
collagen type IV alpha 6 chain
Summary
- Gene Symbol
-
- COL4A6
- Organism
- Homo sapiens (human)
Annotation
- Keyword
-
- Alternative splicing
- Basement membrane
- Cell adhesion
- Chromosomal rearrangement
- Collagen
- Disease variant
- Disulfide bond
- Glycoprotein
- Hydroxylation
- Non-syndromic deafness
- Proteomics identification
- Reference proteome
- Repeat
- Signal
- Proteins
Gene Ontology (GO)
| GO Term | Evidence Code | PMID |
|---|---|---|
| cell adhesion | ||
| extracellular matrix organization | ||
| extracellular matrix organization | ||
| collagen-activated tyrosine kinase receptor signaling pathway | ||
| cellular response to amino acid stimulus |
GO Hierarchy
| GO Term | Evidence Code | PMID |
|---|---|---|
| extracellular region | ||
| collagen type IV trimer | ||
| collagen type IV trimer | ||
| basement membrane |
|
|
| extracellular space |
GO Hierarchy
OrthoDB (Group)
- Group level
- Eukaryota
- Group Name
- collagen
- Functional Category
-
- E: Amino acid transport and metabolism
- G: Carbohydrate transport and metabolism
- T: Signal transduction mechanisms
| Gene Ontology |
|---|
| extracellular matrix organization |
| extracellular matrix structural constituent conferring tensile strength |
| extracellular matrix structural constituent |
| InterPro |
|---|
| C-type lectin fold |
| Collagen IV, non-collagenous domain superfamily |
| Collagen IV, non-collagenous |
| Collagen triple helix repeat |
Disease
- Disease Ontology
| DO ID | Disease Name | Source |
|---|---|---|
| DOID:0111740 | X-linked deafness 6 |
Ortholog
| Species | Gene ID | Alliance of Genome Resources | Orthologous MAtrix |
|---|---|---|---|
| 1282 | FB:FBgn0000299 | ||
| 1285 | FB:FBgn0000299 | ||
| 1286 | FB:FBgn0000299 | ||
| 1287 | FB:FBgn0000299 | ||
| 1288 | Xenbase:XB-GENE-6034568 | ||
| 12826 | FB:FBgn0000299 | ||
| 12827 | FB:FBgn0000299 | ||
| 12828 | FB:FBgn0000299 | ||
| 12829 | FB:FBgn0000299 | ||
| 33726 | WB:WBGene00001263 |
