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opsin 4

Summary

Gene Symbol

Opn4

Organism

Rattus norvegicus (Norway rat)

External Links

NCBI Gene

192223

PubChem

192223

Alliance of Genome Resources

RGD:621701

Annotation

Keyword

Biological rhythms
Cell membrane
Cell projection
Disulfide bond
G-protein coupled receptor
Glycoprotein
Reference proteome
Retinal protein
Transmembrane helix

Proteins

Displaying **all 2** entries
UniProt	Protein Name
Q8R456	Opsin-4
A6KFQ9	Opsin-4

Annotation information from UniProt.

Gene Ontology (GO)

Displaying entries **1 - 5** of 19 in total

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GO Term	Evidence Code	PMID
G protein-coupled receptor signaling pathway	IBA
G protein-coupled receptor signaling pathway	IEA
visual perception	IEA
phototransduction	ISO
phototransduction	IDA	11834834

GO Hierarchy

biological process

cellular process [inference]

signal transduction [inference]

cellular response to stimulus [inference]

cellular response to environmental stimulus [inference]

cellular response to abiotic stimulus [inference]

cellular response to radiation [inference]

cellular response to light stimulus

multicellular organismal process [inference]

system process [inference]

nervous system process [inference]

sensory perception [inference]

sensory perception of light stimulus [inference]

visual perception

behavior [inference]

visual behavior [inference]

optokinetic behavior

developmental process [inference]

anatomical structure development [inference]

retina development in camera-type eye

anatomical structure regression [inference]

hyaloid vascular plexus regression

locomotion [inference]

taxis [inference]

thermotaxis

rhythmic process

response to stimulus [inference]

response to external stimulus [inference]

detection of external stimulus [inference]

detection of light stimulus [inference]

detection of temperature stimulus [inference]

detection of temperature stimulus involved in sensory perception [inference]

detection of temperature stimulus involved in thermoception

response to abiotic stimulus [inference]

response to temperature stimulus [inference]

detection of temperature stimulus [inference]

detection of temperature stimulus involved in sensory perception [inference]

detection of temperature stimulus involved in thermoception

thermotaxis

response to radiation [inference]

response to light stimulus [inference]

visual behavior [inference]

optokinetic behavior

detection of light stimulus [inference]

cellular response to light stimulus

cellular response to radiation [inference]

cellular response to light stimulus

detection of abiotic stimulus [inference]

detection of light stimulus [inference]

detection of temperature stimulus [inference]

detection of temperature stimulus involved in sensory perception [inference]

detection of temperature stimulus involved in thermoception

cellular response to abiotic stimulus [inference]

cellular response to radiation [inference]

cellular response to light stimulus

detection of stimulus [inference]

detection of external stimulus [inference]

detection of light stimulus [inference]

detection of temperature stimulus [inference]

detection of temperature stimulus involved in sensory perception [inference]

detection of temperature stimulus involved in thermoception

detection of abiotic stimulus [inference]

detection of light stimulus [inference]

detection of temperature stimulus [inference]

detection of temperature stimulus involved in sensory perception [inference]

detection of temperature stimulus involved in thermoception

detection of stimulus involved in sensory perception [inference]

detection of temperature stimulus involved in sensory perception [inference]

detection of temperature stimulus involved in thermoception

cellular response to stimulus [inference]

cellular response to environmental stimulus [inference]

cellular response to abiotic stimulus [inference]

cellular response to radiation [inference]

cellular response to light stimulus

biological regulation [inference]

regulation of biological process [inference]

regulation of circadian rhythm

regulation of cellular process [inference]

signal transduction [inference]

Displaying entries **1 - 5** of 9 in total

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GO Term	Evidence Code	PMID
plasma membrane	ISS
plasma membrane	ISO
plasma membrane	IBA
membrane	TAS	11834834
membrane	IEA

GO Hierarchy

cellular component

cellular anatomical entity [inference]

membrane

plasma membrane

plasma membrane region [inference]

sperm head plasma membrane

cell projection [inference]

plasma membrane bounded cell projection [inference]

neuron projection [inference]

perikaryon

Displaying entries **1 - 5** of 7 in total

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GO Term	Evidence Code	PMID
G protein-coupled receptor activity	IEA
11-cis retinal binding	ISS
11-cis retinal binding	ISO
G protein-coupled photoreceptor activity	ISO
G protein-coupled photoreceptor activity	IDA	11834834

GO Hierarchy

molecular function

binding [inference]

lipid binding [inference]

isoprenoid binding [inference]

retinoid binding [inference]

retinal binding [inference]

11-cis retinal binding

small molecule binding [inference]

vitamin binding [inference]

retinal binding [inference]

11-cis retinal binding

molecular transducer activity [inference]

signaling receptor activity [inference]

transmembrane signaling receptor activity [inference]

G protein-coupled receptor activity

G protein-coupled photoreceptor activity

photoreceptor activity

G protein-coupled photoreceptor activity

Gene Ontology information from NCBI Gene and UniProt.

OrthoDB (Group)

Group level

Eukaryota

Group Name

Opsin

Functional Category

E: Amino acid transport and metabolism
O: Posttranslational modification, protein turnover, chaperones
T: Signal transduction mechanisms

Displaying **all 3** entries
Gene Ontology
cellular response to light stimulus
phototransduction
visual perception

Displaying **all 3** entries
InterPro
G protein-coupled receptor, rhodopsin-like
GPCR, rhodopsin-like, 7TM
Visual pigments (opsins) retinal binding site

Ortholog

Displaying entries **31 - 40** of 75 in total

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Species	Gene ID	Orthologous MAtrix
Salmo salar	101448027	SALSA70345
Salmo salar	101448028	SALSA57941
Mustela putorius furo	101684380	MUSPF07699
Melopsittacus undulatus	101869116	MELUD00043
Chinchilla lanigera	102008648	CHILA21429
Macaca fascicularis	102126067	MACFA42500
Haplochromis burtoni	102302617	HAPBU27864
Myotis lucifugus	102439356	MYOLU12436
Pelodiscus sinensis	102455514	PELSI13243
Astyanax mexicanus	103023553	ASTMX12125

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

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Summary

External Links

Annotation

OrthoDB (Group)

International Collaboration

Acknowledgements