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Guidelines

MIRAGE

3-deoxy-manno-octulosonate cytidylyltransferase

Summary

Gene Symbol

kdsB

Organism

Porphyromonas gingivalis ATCC 33277

External Links

NCBI Gene: 29256911
PubChem: 29256911

Annotation

Keyword

Cytoplasm
Lipopolysaccharide biosynthesis
Nucleotidyltransferase

Proteins

Displaying 1 entry
UniProt	Protein Name
B2RLM4	CMP-2-keto-3-deoxyoctulosonic acid synthase

Annotation information from UniProt.

Gene Ontology (GO)

Displaying **all 2** entries
GO Term	Evidence Code	PMID
lipopolysaccharide biosynthetic process
CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

GO Hierarchy

biological process

metabolic process [inference]

nitrogen compound metabolic process [inference]

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

biosynthetic process [inference]

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

heterocycle biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

aromatic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

organic substance biosynthetic process [inference]

lipid biosynthetic process [inference]

lipopolysaccharide biosynthetic process

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

carbohydrate derivative biosynthetic process [inference]

lipopolysaccharide biosynthetic process

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

organic cyclic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular metabolic process [inference]

cellular aromatic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

aromatic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

phosphorus metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

heterocycle biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

aromatic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

heterocycle metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

heterocycle biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

primary metabolic process [inference]

carbohydrate metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

lipid metabolic process [inference]

lipid biosynthetic process [inference]

lipopolysaccharide biosynthetic process

liposaccharide metabolic process [inference]

lipopolysaccharide metabolic process [inference]

lipopolysaccharide biosynthetic process

small molecule metabolic process [inference]

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

organic substance metabolic process [inference]

carbohydrate metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

lipid metabolic process [inference]

lipid biosynthetic process [inference]

lipopolysaccharide biosynthetic process

liposaccharide metabolic process [inference]

lipopolysaccharide metabolic process [inference]

lipopolysaccharide biosynthetic process

macromolecule metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

lipopolysaccharide metabolic process [inference]

lipopolysaccharide biosynthetic process

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

carbohydrate derivative metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

carbohydrate derivative biosynthetic process [inference]

lipopolysaccharide biosynthetic process

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

liposaccharide metabolic process [inference]

lipopolysaccharide metabolic process [inference]

lipopolysaccharide biosynthetic process

organic cyclic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

organic cyclic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

organic substance biosynthetic process [inference]

lipid biosynthetic process [inference]

lipopolysaccharide biosynthetic process

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

carbohydrate derivative biosynthetic process [inference]

lipopolysaccharide biosynthetic process

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

organic cyclic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular process [inference]

cellular metabolic process [inference]

cellular aromatic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

aromatic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

phosphorus metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

lipopolysaccharide biosynthetic process

heterocycle biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

aromatic compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

cellular nitrogen compound biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

heterocycle metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

nucleobase-containing small molecule metabolic process [inference]

nucleotide-sugar metabolic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

CMP-keto-3-deoxy-D-manno-octulosonic acid metabolic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

heterocycle biosynthetic process [inference]

nucleobase-containing compound biosynthetic process [inference]

nucleotide-sugar biosynthetic process [inference]

CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process

Displaying 1 entry
GO Term	Evidence Code	PMID
cytosol

GO Hierarchy

cellular component

cellular anatomical entity [inference]

cytosol

Displaying 1 entry
GO Term	Evidence Code	PMID
3-deoxy-manno-octulosonate cytidylyltransferase activity

GO Hierarchy

molecular function

catalytic activity [inference]

transferase activity [inference]

transferase activity, transferring phosphorus-containing groups [inference]

nucleotidyltransferase activity [inference]

cytidylyltransferase activity [inference]

3-deoxy-manno-octulosonate cytidylyltransferase activity

Gene Ontology information from NCBI Gene and UniProt.

OrthoDB (Group)

Group level

Bacteria

Group Name

3-deoxy-manno-octulosonate cytidylyltransferase

Functional Category

C: Energy production and conversion
E: Amino acid transport and metabolism
M: Cell wall/membrane/envelope biogenesis

Displaying **all 5** entries
Gene Ontology
3-deoxy-manno-octulosonate cytidylyltransferase activity
CMP-keto-3-deoxy-D-manno-octulosonic acid biosynthetic process
lipopolysaccharide biosynthetic process
nucleotidyltransferase activity
transferase activity

Displaying **all 3** entries
InterPro
3-deoxy-D-manno-octulosonate cytidylyltransferase
Acylneuraminate cytidylyltransferase
Nucleotide-diphospho-sugar transferases

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Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

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GlyCosmos Portal v4.4.0

Last updated: December 8, 2025