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Guidelines

MIRAGE

NOP58 ribonucleoprotein

Summary

Gene Symbol

NOP58

Organism

Homo sapiens (human)

External Links

NCBI Gene

51602

PubChem

51602

Alliance of Genome Resources

HGNC:29926

JoGo

NOP58

TogoVar

NOP58

Annotation

Keyword

3D-structure
Isopeptide bond
Nucleus
Phosphoprotein
Proteomics identification
Reference proteome
Ribonucleoprotein
Ribosome biogenesis
Ubl conjugation

Proteins

Displaying 1 entry
UniProt	Protein Name
Q9Y2X3	Nucleolar protein 5

Annotation information from UniProt.

Gene Ontology (GO)

Displaying **all 3** entries
GO Term	Evidence Code	PMID
rRNA processing	TAS	10925205
ribosomal small subunit biogenesis	IDA	34516797
snoRNA localization	IMP	17636026

GO Hierarchy

biological process

metabolic process [inference]

nitrogen compound metabolic process [inference]

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

RNA metabolic process [inference]

RNA processing [inference]

ncRNA processing [inference]

rRNA processing

ncRNA metabolic process [inference]

rRNA metabolic process [inference]

rRNA processing

ncRNA processing [inference]

rRNA processing

cellular metabolic process [inference]

cellular aromatic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

RNA metabolic process [inference]

RNA processing [inference]

ncRNA processing [inference]

rRNA processing

ncRNA metabolic process [inference]

rRNA metabolic process [inference]

rRNA processing

ncRNA processing [inference]

rRNA processing

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

RNA metabolic process [inference]

RNA processing [inference]

ncRNA processing [inference]

rRNA processing

ncRNA metabolic process [inference]

rRNA metabolic process [inference]

rRNA processing

ncRNA processing [inference]

rRNA processing

heterocycle metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

RNA metabolic process [inference]

RNA processing [inference]

ncRNA processing [inference]

rRNA processing

ncRNA metabolic process [inference]

rRNA metabolic process [inference]

rRNA processing

ncRNA processing [inference]

rRNA processing

primary metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

RNA metabolic process [inference]

RNA processing [inference]

ncRNA processing [inference]

rRNA processing

ncRNA metabolic process [inference]

rRNA metabolic process [inference]

rRNA processing

ncRNA processing [inference]

rRNA processing

organic substance metabolic process [inference]

macromolecule metabolic process [inference]

nucleic acid metabolic process [inference]

RNA metabolic process [inference]

RNA processing [inference]

ncRNA processing [inference]

rRNA processing

ncRNA metabolic process [inference]

rRNA metabolic process [inference]

rRNA processing

ncRNA processing [inference]

rRNA processing

organic cyclic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

RNA metabolic process [inference]

RNA processing [inference]

ncRNA processing [inference]

rRNA processing

ncRNA metabolic process [inference]

rRNA metabolic process [inference]

rRNA processing

ncRNA processing [inference]

rRNA processing

cellular process [inference]

cellular metabolic process [inference]

cellular aromatic compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

RNA metabolic process [inference]

RNA processing [inference]

ncRNA processing [inference]

rRNA processing

ncRNA metabolic process [inference]

rRNA metabolic process [inference]

rRNA processing

ncRNA processing [inference]

rRNA processing

cellular nitrogen compound metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

RNA metabolic process [inference]

RNA processing [inference]

ncRNA processing [inference]

rRNA processing

ncRNA metabolic process [inference]

rRNA metabolic process [inference]

rRNA processing

ncRNA processing [inference]

rRNA processing

heterocycle metabolic process [inference]

nucleobase-containing compound metabolic process [inference]

nucleic acid metabolic process [inference]

RNA metabolic process [inference]

RNA processing [inference]

ncRNA processing [inference]

rRNA processing

ncRNA metabolic process [inference]

rRNA metabolic process [inference]

rRNA processing

ncRNA processing [inference]

rRNA processing

cellular component organization or biogenesis [inference]

cellular component biogenesis [inference]

ribonucleoprotein complex biogenesis [inference]

ribosomal small subunit biogenesis

localization [inference]

macromolecule localization [inference]

RNA localization [inference]

snoRNA localization

Displaying entries **6 - 10** of 15 in total

« First

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3

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GO Term	Evidence Code	PMID
sno(s)RNA-containing ribonucleoprotein complex	IDA	17636026
cytosol	IDA
Cajal body	IDA	16687569
membrane	HDA	19946888
box C/D RNP complex	NAS	17636026

GO Hierarchy

cellular component

protein-containing complex [inference]

ribonucleoprotein complex [inference]

sno(s)RNA-containing ribonucleoprotein complex

box C/D RNP complex

preribosome [inference]

small-subunit processome

pre-snoRNP complex

cellular anatomical entity [inference]

nuclear body [inference]

Cajal body

organelle [inference]

non-membrane-bounded organelle [inference]

intracellular non-membrane-bounded organelle [inference]

nucleolus

intracellular organelle [inference]

intracellular non-membrane-bounded organelle [inference]

nucleolus

Displaying entries **1 - 5** of 6 in total

1

2

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GO Term	Evidence Code	PMID
TFIID-class transcription factor complex binding	IPI	17636026
RNA binding	HDA	22658674 22681889
protein binding	IPI	17636026 21522132 30021884 33367824 33961781 35271311
snoRNA binding	IDA	17636026
snoRNA binding	IBA

GO Hierarchy

molecular function

binding [inference]

protein binding

basal transcription machinery binding [inference]

basal RNA polymerase II transcription machinery binding [inference]

RNA polymerase II general transcription initiation factor binding [inference]

TFIID-class transcription factor complex binding

transcription factor binding [inference]

general transcription initiation factor binding [inference]

RNA polymerase II general transcription initiation factor binding [inference]

TFIID-class transcription factor complex binding

enzyme binding [inference]

ATPase binding

protein-containing complex binding [inference]

TFIID-class transcription factor complex binding

organic cyclic compound binding [inference]

nucleic acid binding [inference]

snoRNA binding

Gene Ontology information from NCBI Gene and UniProt.

OrthoDB (Group)

Group level

Eukaryota

Group Name

Nucleolar protein

Functional Category

J: Translation, ribosomal structure and biogenesis
K: Transcription
T: Signal transduction mechanisms

Displaying 1 entry
Gene Ontology
snoRNA binding

Displaying **all 6** entries
InterPro
NOSIC
Nop domain superfamily
Nop domain
Nop, C-terminal domain
Nucleolar protein 58/56, N-terminal
Nucleolar protein Nop56/Nop58

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International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

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GlyCosmos Portal v4.5.0

Last updated: April 6, 2026