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NDC1 transmembrane nucleoporin

Summary

Gene Symbol

NDC1

Organism

Homo sapiens (human)

External Links

NCBI Gene

55706

PubChem

55706

Alliance of Genome Resources

HGNC:25525

Annotation

Keyword

3D-structure
Alternative splicing
Nuclear pore complex
Phosphoprotein
Reference proteome
Transmembrane helix

Proteins

Displaying 1 entry
UniProt	Protein Name
Q9BTX1	Transmembrane protein 48

Annotation information from UniProt.

Gene Ontology (GO)

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GO Term	Evidence Code	PMID
nucleocytoplasmic transport	NAS	27016207
nuclear pore organization	IBA
homologous chromosome pairing at meiosis	IEA
spermatogenesis	IEA
protein transport	NAS	16600873

GO Hierarchy

biological process

cellular process [inference]

cell cycle process [inference]

meiotic cell cycle process [inference]

chromosome organization involved in meiotic cell cycle [inference]

homologous chromosome pairing at meiosis

cellular localization [inference]

intracellular transport [inference]

nuclear transport [inference]

nucleocytoplasmic transport

localization within membrane [inference]

nuclear pore localization

cellular macromolecule localization [inference]

protein localization [inference]

establishment of protein localization [inference]

protein transport

cellular component organization or biogenesis [inference]

cellular component organization [inference]

organelle organization [inference]

nucleus organization [inference]

nuclear pore organization

nuclear pore complex assembly

nuclear pore localization

chromosome organization [inference]

chromosome organization involved in meiotic cell cycle [inference]

homologous chromosome pairing at meiosis

cellular component assembly [inference]

protein-containing complex assembly [inference]

pore complex assembly [inference]

nuclear pore complex assembly

protein-containing complex organization [inference]

nuclear pore organization

nuclear pore complex assembly

protein-containing complex assembly [inference]

pore complex assembly [inference]

nuclear pore complex assembly

reproductive process [inference]

developmental process involved in reproduction [inference]

spermatogenesis

multicellular organismal reproductive process [inference]

gamete generation [inference]

male gamete generation [inference]

spermatogenesis

meiotic cell cycle process [inference]

chromosome organization involved in meiotic cell cycle [inference]

homologous chromosome pairing at meiosis

developmental process [inference]

developmental process involved in reproduction [inference]

spermatogenesis

localization [inference]

protein-containing complex localization [inference]

nuclear pore localization

macromolecule localization [inference]

cellular macromolecule localization [inference]

protein localization [inference]

establishment of protein localization [inference]

protein transport

establishment of localization [inference]

transport [inference]

intracellular transport [inference]

nuclear transport [inference]

nucleocytoplasmic transport

organic substance transport [inference]

protein transport

nucleobase-containing compound transport [inference]

nucleic acid transport [inference]

RNA transport [inference]

mRNA transport

nitrogen compound transport [inference]

protein transport

nucleobase-containing compound transport [inference]

nucleic acid transport [inference]

RNA transport [inference]

mRNA transport

establishment of protein localization [inference]

protein transport

establishment of RNA localization [inference]

RNA transport [inference]

mRNA transport

establishment of localization in cell [inference]

intracellular transport [inference]

nuclear transport [inference]

nucleocytoplasmic transport

cellular localization [inference]

intracellular transport [inference]

nuclear transport [inference]

nucleocytoplasmic transport

localization within membrane [inference]

nuclear pore localization

cellular macromolecule localization [inference]

protein localization [inference]

establishment of protein localization [inference]

protein transport

Displaying entries **1 - 5** of 10 in total

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GO Term	Evidence Code	PMID
nuclear envelope	TAS
nuclear envelope	IDA	24315095
nuclear pore	NAS	24315095
nuclear pore	IDA	16600873
cytoplasm	IEA

GO Hierarchy

cellular component

protein-containing complex [inference]

nuclear protein-containing complex [inference]

cellular anatomical entity [inference]

cytoplasm

membrane

plasma membrane

organelle membrane [inference]

nuclear membrane

envelope [inference]

organelle envelope [inference]

nuclear envelope

organelle [inference]

non-membrane-bounded organelle [inference]

intracellular non-membrane-bounded organelle [inference]

cytoskeleton [inference]

actin cytoskeleton

intracellular organelle [inference]

intracellular non-membrane-bounded organelle [inference]

cytoskeleton [inference]

actin cytoskeleton

Displaying **all 2** entries
GO Term	Evidence Code	PMID
structural constituent of nuclear pore	IMP	16600873
protein-macromolecule adaptor activity	IBA

GO Hierarchy

molecular function

structural molecule activity [inference]

structural constituent of nuclear pore

molecular adaptor activity [inference]

protein-macromolecule adaptor activity

Gene Ontology information from NCBI Gene and UniProt.

OrthoDB (Group)

Group level

Eukaryota

Group Name

NDC1

Functional Category

I: Lipid transport and metabolism
Q: Secondary metabolites biosynthesis, transport and catabolism
T: Signal transduction mechanisms

Displaying **all 3** entries
Gene Ontology
mRNA transport
nuclear pore organization
spindle pole body-nuclear membrane anchor activity

Displaying 1 entry
InterPro
Nucleoporin protein Ndc1-Nup

Ortholog

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Species	Gene ID	Alliance of Genome Resources	Orthologous MAtrix
Xenopus tropicalis	55706	Xenbase:XB-GENE-5736320
Mus musculus	72787	Xenbase:XB-GENE-5736320	MOUSE39744
Danio rerio	335236		DANRE28808
Pan troglodytes	456867		PANTR21152
Bos taurus	616114		BOVIN26907
Monodelphis domestica	100031676		MONDO00296
Equus caballus	100050513		HORSE27136
Pongo abelii	100172309		PONAB18310
Ciona intestinalis	100186210		CIOIN10237
Taeniopygia guttata	100220323		TAEGU28788