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Integral membrane Yip1 family protein

Summary

Gene Symbol

AT4G30260

Organism

Arabidopsis thaliana (thale cress)

External Links

NCBI Gene: 829149
PubChem: 829149

Annotation

Keyword

Cell wall biogenesis/degradation
Golgi apparatus
Protein transport
Proteomics identification
Reference proteome
Transmembrane helix

Proteins

Displaying **all 3** entries
UniProt	Protein Name
Q93VH1	YPT/RAB GTPase-interacting protein 4b
A0A384KLW9
Q9SUL8

Annotation information from UniProt.

Gene Ontology (GO)

Displaying entries **1 - 5** of 10 in total

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2

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GO Term	Evidence Code	PMID
endoplasmic reticulum to Golgi vesicle-mediated transport	IEA
protein transport
polysaccharide transport	IGI	23832588
root hair initiation	IMP	30770391
pectin biosynthetic process	IMP	23832588

GO Hierarchy

biological process

metabolic process [inference]

biosynthetic process [inference]

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

organic substance biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cellular metabolic process [inference]

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

primary metabolic process [inference]

carbohydrate metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall polysaccharide metabolic process [inference]

cell wall beta-glucan metabolic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

plant-type cell wall cellulose metabolic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

galacturonan metabolic process [inference]

pectin metabolic process [inference]

pectin biosynthetic process

glucan metabolic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

beta-glucan metabolic process [inference]

cellulose metabolic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

plant-type cell wall cellulose metabolic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan metabolic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

plant-type cell wall cellulose metabolic process [inference]

plant-type cell wall cellulose biosynthetic process

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

organic substance metabolic process [inference]

carbohydrate metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall polysaccharide metabolic process [inference]

cell wall beta-glucan metabolic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

plant-type cell wall cellulose metabolic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

galacturonan metabolic process [inference]

pectin metabolic process [inference]

pectin biosynthetic process

glucan metabolic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

beta-glucan metabolic process [inference]

cellulose metabolic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

plant-type cell wall cellulose metabolic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan metabolic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

plant-type cell wall cellulose metabolic process [inference]

plant-type cell wall cellulose biosynthetic process

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

macromolecule metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall polysaccharide metabolic process [inference]

cell wall beta-glucan metabolic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

plant-type cell wall cellulose metabolic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

galacturonan metabolic process [inference]

pectin metabolic process [inference]

pectin biosynthetic process

glucan metabolic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

beta-glucan metabolic process [inference]

cellulose metabolic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

plant-type cell wall cellulose metabolic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan metabolic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

plant-type cell wall cellulose metabolic process [inference]

plant-type cell wall cellulose biosynthetic process

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall macromolecule metabolic process [inference]

cell wall polysaccharide metabolic process [inference]

cell wall beta-glucan metabolic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

plant-type cell wall cellulose metabolic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

organic substance biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cellular process [inference]

cell growth [inference]

unidimensional cell growth

vesicle-mediated transport [inference]

Golgi vesicle transport [inference]

endoplasmic reticulum to Golgi vesicle-mediated transport

cellular metabolic process [inference]

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

glucan biosynthetic process [inference]

beta-glucan biosynthetic process [inference]

cellulose biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

pectin biosynthetic process

cell wall polysaccharide biosynthetic process [inference]

cell wall beta-glucan biosynthetic process [inference]

plant-type cell wall cellulose biosynthetic process

cellular localization [inference]

intracellular transport [inference]

endoplasmic reticulum to Golgi vesicle-mediated transport

cellular macromolecule localization [inference]

protein localization [inference]

establishment of protein localization [inference]

protein transport

developmental process [inference]

anatomical structure morphogenesis [inference]

cell morphogenesis [inference]

anatomical structure development [inference]

plant organ development

root development

growth [inference]

cell growth [inference]

unidimensional cell growth

developmental growth [inference]

developmental growth involved in morphogenesis [inference]

unidimensional cell growth

localization [inference]

macromolecule localization [inference]

cellular macromolecule localization [inference]

protein localization [inference]

establishment of protein localization [inference]

protein transport

establishment of localization [inference]

transport [inference]

vesicle-mediated transport [inference]

Golgi vesicle transport [inference]

endoplasmic reticulum to Golgi vesicle-mediated transport

intracellular transport [inference]

endoplasmic reticulum to Golgi vesicle-mediated transport

organic substance transport [inference]

carbohydrate transport [inference]

polysaccharide transport

protein transport

nitrogen compound transport [inference]

protein transport

establishment of protein localization [inference]

protein transport

establishment of localization in cell [inference]

intracellular transport [inference]

endoplasmic reticulum to Golgi vesicle-mediated transport

cellular localization [inference]

intracellular transport [inference]

endoplasmic reticulum to Golgi vesicle-mediated transport

cellular macromolecule localization [inference]

protein localization [inference]

establishment of protein localization [inference]

protein transport

biological regulation [inference]

regulation of biological process [inference]

regulation of localization [inference]

regulation of transport [inference]

regulation of protein transport

regulation of cellular localization [inference]

regulation of protein localization [inference]

regulation of establishment of protein localization [inference]

regulation of protein transport

regulation of cellular process [inference]

regulation of cellular localization [inference]

regulation of protein localization [inference]

regulation of establishment of protein localization [inference]

regulation of protein transport

Displaying entries **1 - 5** of 6 in total

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GO Term	Evidence Code	PMID
Golgi apparatus	HDA	22430844 22923678 25122472
plasma membrane	HDA	15060130 28887381
endosome	HDA	22923678
trans-Golgi network membrane	IDA	23832588
trans-Golgi network	HDA IDA	22923678 23832588

GO Hierarchy

cellular component

cellular anatomical entity [inference]

membrane [inference]

plasma membrane

organelle membrane [inference]

trans-Golgi network membrane

organelle subcompartment [inference]

Golgi apparatus subcompartment [inference]

trans-Golgi network

organelle [inference]

membrane-bounded organelle [inference]

vesicle [inference]

intracellular vesicle [inference]

cytoplasmic vesicle [inference]

endosome

intracellular membrane-bounded organelle [inference]

intracellular vesicle [inference]

cytoplasmic vesicle [inference]

endosome

intracellular organelle [inference]

intracellular membrane-bounded organelle [inference]

intracellular vesicle [inference]

cytoplasmic vesicle [inference]

endosome

Displaying **all 2** entries
GO Term	Evidence Code	PMID
protein binding	IPI	21798944 23832588
protein homodimerization activity	IDA	23832588

GO Hierarchy

molecular function

binding [inference]

protein binding

identical protein binding [inference]

protein homodimerization activity

protein dimerization activity [inference]

protein homodimerization activity

Gene Ontology information from NCBI Gene and UniProt.

OrthoDB (Group)

Group level

Eukaryota

Group Name

Trehalose-phosphate phosphatase A

Functional Category

E: Amino acid transport and metabolism
M: Cell wall/membrane/envelope biogenesis
T: Signal transduction mechanisms

Ortholog

Displaying entries **1 - 10** of 15 in total

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Species	Gene ID	OrthoDB
Arabidopsis lyrata subsp. lyrata	9303431	81972_0:005daa
Capsella rubella	17879613	81985_0:004d1d
Eutrema salsugineum	18030661	72664_0:000196
Brassica rapa	103834680	3711_0:007e8e
Brassica rapa	103852799	3711_0:000e5f
Camelina sativa	104717172	90675_0:008d7c
Camelina sativa	104721831	90675_0:00ab65
Camelina sativa	104730292	90675_0:00b95c
Tarenaya hassleriana	104803937	28532_0:006783
Brassica napus	106390050	3708_0:00ca1d

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

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Summary

External Links

Annotation

OrthoDB (Group)

International Collaboration

Acknowledgements