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xylogalacturonan deficient 1

Summary

Gene Symbol

XGD1

Organism

Arabidopsis thaliana (thale cress)

External Links

NCBI Gene: 833302
KEGG Gene ID: ath:AT5G33290
PubChem: 833302

Annotation

Keyword

Cell wall biogenesis/degradation
Glycoprotein
Glycosyltransferase
Golgi apparatus
Reference proteome
Signal-anchor
Transmembrane helix

Proteins

Displaying **all 2** entries
UniProt	Protein Name
W8PUC9
Q94AA9	Protein XYLOGALACTURONAN DEFICIENT 1

Annotation information from UniProt.

Gene Ontology (GO)

Displaying **all 4** entries
GO Term	Evidence Code	PMID
cell wall organization
xylogalacturonan metabolic process	IMP	18460606
protein glycosylation	IEA
pectin biosynthetic process	IMP	18460606

GO Hierarchy

biological process

metabolic process [inference]

nitrogen compound metabolic process [inference]

organonitrogen compound metabolic process [inference]

protein metabolic process [inference]

protein modification process [inference]

protein glycosylation

biosynthetic process [inference]

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

organic substance biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

cellular metabolic process [inference]

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

primary metabolic process [inference]

carbohydrate metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

galacturonan metabolic process [inference]

xylogalacturonan metabolic process

pectin metabolic process [inference]

pectin biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

protein metabolic process [inference]

protein modification process [inference]

protein glycosylation

glycosylation [inference]

macromolecule glycosylation [inference]

protein glycosylation

organic substance metabolic process [inference]

carbohydrate metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

galacturonan metabolic process [inference]

xylogalacturonan metabolic process

pectin metabolic process [inference]

pectin biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

macromolecule metabolic process [inference]

polysaccharide metabolic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

galacturonan metabolic process [inference]

xylogalacturonan metabolic process

pectin metabolic process [inference]

pectin biosynthetic process

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

protein metabolic process [inference]

protein modification process [inference]

protein glycosylation

macromolecule modification [inference]

protein modification process [inference]

protein glycosylation

macromolecule glycosylation [inference]

protein glycosylation

organonitrogen compound metabolic process [inference]

protein metabolic process [inference]

protein modification process [inference]

protein glycosylation

organic substance biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

carbohydrate biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

cellular process [inference]

cellular metabolic process [inference]

cellular biosynthetic process [inference]

macromolecule biosynthetic process [inference]

polysaccharide biosynthetic process [inference]

pectin biosynthetic process

cell wall organization or biogenesis [inference]

cell wall organization

cellular component organization or biogenesis [inference]

cellular component organization [inference]

external encapsulating structure organization [inference]

cell wall organization

Displaying **all 5** entries
GO Term	Evidence Code	PMID
endosome	HDA	22923678
trans-Golgi network	HDA	22923678
Golgi apparatus	HDA IDA	18460606 22923678
chloroplast	ISM
Golgi membrane

GO Hierarchy

cellular component

cellular anatomical entity [inference]

membrane [inference]

organelle membrane [inference]

bounding membrane of organelle [inference]

Golgi membrane

organelle subcompartment [inference]

Golgi apparatus subcompartment [inference]

trans-Golgi network

organelle [inference]

membrane-bounded organelle [inference]

vesicle [inference]

intracellular vesicle [inference]

cytoplasmic vesicle [inference]

endosome

intracellular membrane-bounded organelle [inference]

Golgi apparatus

plastid [inference]

chloroplast

intracellular vesicle [inference]

cytoplasmic vesicle [inference]

endosome

intracellular organelle [inference]

intracellular membrane-bounded organelle [inference]

Golgi apparatus

plastid [inference]

chloroplast

intracellular vesicle [inference]

cytoplasmic vesicle [inference]

endosome

Displaying **all 2** entries
GO Term	Evidence Code	PMID
xylogalacturonan beta-1,3-xylosyltransferase activity	IEA
UDP-xylosyltransferase activity	IDA	18460606

GO Hierarchy

molecular function

catalytic activity [inference]

transferase activity [inference]

glycosyltransferase activity [inference]

UDP-glycosyltransferase activity [inference]

UDP-xylosyltransferase activity

pentosyltransferase activity [inference]

xylosyltransferase activity [inference]

UDP-xylosyltransferase activity

xylogalacturonan beta-1,3-xylosyltransferase activity

Gene Ontology information from NCBI Gene and UniProt.

KEGG BRITE Database

Orthology

K18789

Name

xylogalacturonan beta-1,3-xylosyltransferase [EC:2.4.2.41]

References

18460606

International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

GlyCosmos Portal v4.0.0

Last updated: August 19, 2024

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Acknowledgements