Submissions
GlyTouCan
Glycan Structure Repository
GlyComb
Glycoconjugate Repository
GlycoPOST
Glycomics MS raw data Repository
UniCarb-DR
Glycomics MS Repository for glycan annotations from GlycoWorkbench
LM-GlycoRepo
Repository for lectin-assisted multimodality data
Resources Genes Glycoproteins Lectins Glycolipids Glycans Pathways Diseases Organisms
All Resources
Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
Other Information
Release Statistics Download
Tools
SugarDrawer GlycanBuilder Glycan Converters GlycoMaple GlycomeAtlas LM-GlycomeAtlas GALAXY MCAW GlycoSim GRable
Search Tools
Cross Search Glycan Search Publication Search Programmatic Access
Standards Ontologies Notations
Guidelines
MIRAGE
glycerophosphocholine phosphodiesterase

Summary
Gene Symbol
  • GDE1
Organism
Saccharomyces cerevisiae S288C
NCBI Gene
855994
PubChem
855994
Alliance of Genome Resources
Annotation
Keyword
  • ANK repeat
  • Cytoplasm
  • Hydrolase
  • Phosphoprotein
  • Reference proteome
  • Repeat
Proteins
Displaying 1 entry
UniProt Protein Name
Q02979
  • Glycerophosphodiester phosphodiesterase GDE1
Annotation information from UniProt.
Gene Ontology (GO)
Displaying all 3 entries
GO Term Evidence Code PMID
lipid metabolic process
glycerophospholipid catabolic process
glycerophospholipid catabolic process
GO Hierarchy
Displaying all 2 entries
GO Term Evidence Code PMID
cytoplasm
cytoplasm
GO Hierarchy
Gene Ontology information from NCBI Gene and UniProt.
OrthoDB (Group)
Group level
Eukaryota
Group Name
glycerophosphocholine phosphodiesterase
Functional Category
  • G: Carbohydrate transport and metabolism
  • I: Lipid transport and metabolism
  • T: Signal transduction mechanisms
Displaying all 3 entries
Gene Ontology
glycerophosphocholine phosphodiesterase activity
glycerophospholipid catabolic process
lipid metabolic process
Displaying all 2 entries
InterPro
Glycerophosphodiester phosphodiesterase domain
PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily
Alliance of Genome Resources
Expression
Displaying 1 entry
Location References
Rhea

RHEA:16061

H2O + sn-glycerol 3-phosphocholine
choline + H+ + sn-glycerol 3-phosphate
Enzyme
PMID
LIPID MAPS Gene / Proteome Database
LMPD ID
LMP007127
Gene Name
Gde1p
Ortholog
Displaying all 2 entries
Species Gene ID Alliance of Genome Resources Orthologous MAtrix
56261 Xenbase:XB-GENE-967385
855994 Xenbase:XB-GENE-485782
About Release Notes Help Feedback
International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

Logo License Policies Site Map

Contact: support@glycosmos.org

This work is licensed under Creative Commons Attribution 4.0 International

GlyCosmos Portal v4.4.0

Last updated: December 8, 2025