GlyCosmos Portal

Submissions

G55220VL

Summary

GlyTouCan ID: G55220VL
IUPAC Condensed: Man(a1-3)[Man(a1-3)[Man(a1-6)]Man(a1-6)]Man(b1-4)GlcNAc(b1-4)GlcNAc(b1-
Motifs: N-Glycan high mannose
Subsumption Level: Fully-defined saccharide
Monoisotopic Mass: 1234.43

External Links

GlyConnect structure

10773
1443

GlyGen

G55220VL

ChEBI

71514

PubChem Compound

70698382

PubChem Substance

252296300

CarbBank

1401 1416 1418 1419 1421 1422 1423 1424 2783 2785 3832 3833 4347 4633 5053 5964 5985 6016 6220 6221 7531 7532 7533 7534 7536 7537 7538 7539 7540 7541 7542 7543 7544 7547 7548 7549 7551 7552 7553 7554 7555 7556 7557 7558 7559 7560 7561 7562 7563 7564 7565 7566 7567 7568 7569 7570 8524 9021 9837 11854 12343 13814 15704 16827 21760 22017 22615 24629 24676 25195 25487 25613 30787 31281 32812 33198 33560 33846 33973 34642 36232 37072 38413 38458 38694 39309 39418 40667 41471 41482 41786 41788 42023 43562 43664 44680 44734 44910 45832 46669 46712 50778

3D Structures

GLYCAM: DManpa1-3[DManpa1-3[DManpa1-6]DManpa1-6]DManpb1-4DGlcpNAcb1-4DGlcpNAcb1-OH

GlycoShape

G55220VL

Displaying 1 entry
Archetype	α	β
G00028MO	G58214IQ	G55220VL

Organisms

Displaying entries **1 - 5** of 14 in total

1

2

3

Next ›

Last »
Organisms	Evidence
Gallus gallus (chicken)	GlyTouCan(glycome-db)
Cricetinae (hamsters)	GlyTouCan(glycome-db)
Mus musculus (house mouse)	GlyConnectStructure
Cavia porcellus (domestic guinea pig)	GlyTouCan(glycome-db)
Sus scrofa (pig)	GlyTouCan(glycome-db)

Taxonomic Hierarchy

root

cellular organisms [inference]

Eukaryota (eucaryotes) [inference]

Opisthokonta [inference]

Metazoa (metazoans) [inference]

Eumetazoa [inference]

Bilateria [inference]

Deuterostomia [inference]

Chordata (chordates) [inference]

Craniata [inference]

Vertebrata (vertebrates) [inference]

Gnathostomata (jawed vertebrates) [inference]

Teleostomi [inference]

Euteleostomi (bony vertebrates) [inference]

Sarcopterygii [inference]

Dipnotetrapodomorpha [inference]

Tetrapoda (tetrapods) [inference]

Amniota (amniotes) [inference]

Mammalia (mammals) [inference]

Theria [inference]

Eutheria (placentals) [inference]

Boreoeutheria [inference]

Laurasiatheria [inference]

Artiodactyla (even-toed ungulates & whales) [inference]

Suina [inference]

Suidae (pigs) [inference]

Sus [inference]

Sus scrofa (pig)

Ruminantia [inference]

Pecora [inference]

Bovidae [inference]

Bovinae [inference]

Bos (cattle) [inference]

Bos taurus (domestic cattle)

Euarchontoglires [inference]

Primates [inference]

Haplorrhini [inference]

Simiiformes [inference]

Catarrhini [inference]

Hominoidea (apes) [inference]

Hominidae (great apes) [inference]

Homininae [inference]

Homo [inference]

Homo sapiens (human)

Glires (Rodents and rabbits) [inference]

Rodentia (rodent) [inference]

Myomorpha (mice and others) [inference]

Rattus norvegicus (Norway rat)

Mus (mice) [inference]

Mus [inference]

Mus musculus (house mouse)

Cricetidae [inference]

Cricetinae (hamsters)

Cricetulus [inference]

Cricetulus griseus (Chinese hamster)

Hystricomorpha (guinea pigs and others) [inference]

Caviidae (cavies) [inference]

Cavia (guinea pigs) [inference]

Cavia porcellus (domestic guinea pig)

Sauropsida (sauropsids) [inference]

Sauria (diapsids) [inference]

Archelosauria [inference]

Archosauria [inference]

Dinosauria [inference]

Saurischia [inference]

Theropoda [inference]

Coelurosauria [inference]

Aves (birds) [inference]

Neognathae [inference]

Galloanserae [inference]

Galliformes (landfowls) [inference]

Phasianidae (turkeys) [inference]

Phasianinae [inference]

Gallus [inference]

Gallus gallus (chicken)

Protostomia [inference]

Ecdysozoa [inference]

Panarthropoda [inference]

Arthropoda (arthropods) [inference]

Mandibulata [inference]

Pancrustacea [inference]

Hexapoda (hexapods) [inference]

Insecta (insects) [inference]

Dicondylia [inference]

Pterygota (winged insects) [inference]

Neoptera [inference]

Endopterygota [inference]

Hymenoptera [inference]

Apocrita (wasps, ants & bees) [inference]

Aculeata [inference]

Apoidea (bees) [inference]

Anthophila [inference]

Apidae (bumble bees and honey bees) [inference]

Apinae (honey bees) [inference]

Apini [inference]

Apis [inference]

Apis mellifera (honey bee)

Diptera (flies) [inference]

Brachycera [inference]

Muscomorpha [inference]

Eremoneura [inference]

Cyclorrhapha [inference]

Schizophora [inference]

Acalyptratae [inference]

Ephydroidea [inference]

Drosophilidae (pomace flies) [inference]

Drosophilinae [inference]

Drosophilini [inference]

Drosophila (fruit flies) [inference]

Sophophora [inference]

melanogaster group [inference]

melanogaster subgroup [inference]

Drosophila melanogaster (fruit fly)

Nematoda (roundworms) [inference]

Chromadorea [inference]

Rhabditida [inference]

Rhabditina [inference]

Rhabditomorpha [inference]

Rhabditoidea [inference]

Rhabditidae [inference]

Peloderinae [inference]

Caenorhabditis [inference]

Caenorhabditis elegans

Bacteria (eubacteria) [inference]

Pseudomonadota [inference]

Gammaproteobacteria [inference]

Enterobacterales [inference]

Enterobacteriaceae [inference]

Escherichia [inference]

Escherichia coli

Viruses

GlycoGene Database (GGDB)

Displaying 1 entry
Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
MGAT1	UDP-GlcNAc	G55220VL	Asn-X	G08520NM	Asn-X	1827260

Displaying 1 entry
Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Product	Reducing terminal(Product)	Reference
MGAT1	UDP-GlcNAc	G55220VL	Asn-X	G08520NM	Asn-X	1827260

Displaying 1 entry
Gene Symbol	Donor	Acceptor	Reducing terminal(Acceptor)	Reference
POMGNT1	UDP-GlcNAc	G55220VL	pylidyramine	11709191

KEGG BRITE Database

KEGG ID

G00012

Enzyme

References

Reactions

Displaying **all 2** entries
KEGG Reaction	Enzyme	Acceptor	Product
R05983	2.4.1.101	G55220VL	G08520NM
R12479	3.2.1.113	G40702WU	G55220VL

GALAXY

Glucose Units

ODS: 7.2
Amide: 6.2

Degrading Enzymes

Displaying **all 5** entries
Enzyme	Substrate	Product
α-Fucosidase	G51175PR	G55220VL
β-HexNAcase	G08520NM	G55220VL
β-HexNAcase	G20966TZ	G55220VL
β-HexNAcase	G56748EO	G55220VL
β-Xylosidase	G14390SN	G55220VL

GALAXY: Glycoanalysis by the three axes of MS and chromatography.

Core Protein

Displaying entries **1 - 10** of **142** in total

1

2

3

4

5

…

Next ›

Last »
UniProt ID	Protein Name	Reference	Source
B4F795	Choline transporter-like protein 2	24090084	GlyGen
D3ZE55	Protocadherin-8	24090084	GlyGen
D3ZES7	Plexin A4	24090084	GlyGen
D3ZQP6	Semaphorin 7A (John Milton Hagen blood group)	24090084	GlyGen
D4A2I9	Sortilin-related VPS10 domain containing receptor 3	24090084	GlyGen
D4A9Q5	Carboxypeptidase M	24090084	GlyGen
F1LNP8	Nectin cell adhesion molecule 1	24090084	GlyGen
F1MAA7	Laminin subunit gamma 1	24090084	GlyGen
F1MAN8	Laminin subunit alpha 5	24090084	GlyGen
G3V928	Prolow-density lipoprotein receptor-related protein 1	24090084	GlyGen

Sequence Descriptors

GlycoCT

RES
1b:b-dglc-HEX-1:5
2s:n-acetyl
3b:b-dglc-HEX-1:5
4s:n-acetyl
5b:b-dman-HEX-1:5
6b:a-dman-HEX-1:5
7b:a-dman-HEX-1:5
8b:a-dman-HEX-1:5
9b:a-dman-HEX-1:5
LIN
1:1d(2+1)2n
2:1o(4+1)3d
3:3d(2+1)4n
4:3o(4+1)5d
5:5o(3+1)6d
6:5o(6+1)7d
7:7o(3+1)8d
8:7o(6+1)9d

WURCS

WURCS=2.0/3,7,6/[a2122h-1b_1-5_2*NCC/3=O][a1122h-1b_1-5][a1122h-1a_1-5]/1-1-2-3-3-3-3/a4-b1_b4-c1_c3-d1_c6-e1_e3-f1_e6-g1

Literature

Displaying entries **31 - 40** of 80 in total

« First

‹ Prev

1

2

3

4

5

6

7

8

Next ›

Last »
PubMed ID	Title	First Author	Publication Date	Source
16339150	The Drosophila fused lobes gene encodes an N-acetylglucosaminidase involved in N-glycan processing	Leonard R	2006 Feb 24	GlyGen
17050773	Differential glycosylation of polymeric and monomeric IgA: a possible role in glomerular inflammation in IgA nephropathy	Oortwijn BD	2006 Dec	GlyGen PubChem
15955802	Human serum IgM glycosylation: identification of glycoforms that can bind to mannan-binding lectin	Arnold JN	2005 Aug 12	GlyGen PubChem
15557177	The Glycosylation of Human Serum IgD and IgE and the Accessibility of Identified Oligomannose Structures for Interaction with Mannan-Binding Lectin	Arnold JN	2004 Dec 01	GlyGen PubChem
14623278	N-linked glycan structures of mouse interferon-beta produced by Bombyx mori larvae	Misaki R	2003 Nov 28	GlyGen PubChem
11709191	Muscular Dystrophy and Neuronal Migration Disorder Caused by Mutations in a Glycosyltransferase, POMGnT1	Yoshida A	2001 Nov	PubChem
11676606	Determination of Carbohydrate Structures N-Linked to Soluble CD154 and Characterization of the Interactions of CD40 with CD154 Expressed in Pichia pastoris and Chinese Hamster Ovary Cells	Khandekar SS	2001 Nov	GlyGen PubChem
11278492	Characterization of the glycosylation profiles of Alzheimer's beta -secretase protein Asp-2 expressed in a variety of cell lines	Charlwood J	2001 May 18	GlyGen PubChem
11382750	Identification of core alpha 1,3-fucosylated glycans and cloning of the requisite fucosyltransferase cDNA from Drosophila melanogaster. Potential basis of the neural anti-horseadish peroxidase epitope	Fabini G	2001 Jul 27	GlyGen
11469797	The widespread effect of beta 1,4-galactosyltransferase on N-glycan processing	Fukuta K	2001 Aug 01	GlyGen PubChem

GlyTouCan

GlyComb

GlycoPOST

UniCarb-DR

LM-GlycoRepo

All Resources

Other Information

Tools

Search Tools

Guidelines

Summary

External Links

KEGG BRITE Database

Glucose Units

Sequence Descriptors

International Collaboration

Acknowledgements