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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | November 21, 2024 |
| PDB ID | UniProt ID ▼ | Title | Descriptor |
|---|---|---|---|
| 2PWF | Q2PS28 | Crystal structure of the MutB D200A mutant in complex with glucose | |
| 4GI6 | Q2PS28 | Crystal structure of the MUTB F164L mutant in complex with glucose | |
| 4H7V | Q2PS28 | MUTB inactive double mutant D200A-D415N in complex with GLUCOSE | |
| 4H8U | Q2PS28 | MUTB inactive double mutant D200A-D415N soaked with sucrose and having as bound ligands sucrose in molecule A and the reaction product trehalulose in molecule B | |
| 4H8V | Q2PS28 | Crystal structure of the trehalulose synthase MUTB in complex with trehalulose | |
| 4HA1 | Q2PS28 | MutB inactive double mutant D200A-D415N in complex with isomaltulose | |
| 3LEG | Q2PHL4 | Lectin Domain of Lectinolysin complexed with Lewis Y Antigen | |
| 3LEI | Q2PHL4 | Lectin Domain of Lectinolysin complexed with Fucose | |
| 3LEK | Q2PHL4 | Lectin Domain of Lectinolysin complexed with Lewis B Antigen | |
| 4GWI | Q2PHL4 | His 62 mutant of the lectin binding domain of lectinolysin complexed with Lewis y | |
| 4GWJ | Q2PHL4 | His 62 mutant of the lectin binding domain of Lectinolysin complexed with Lewis b | |
| 4JRN | Q2PAY2 | ROP18 kinase domain in complex with AMP-PNP and sucrose | Rhoptry kinase family protein |
| 6KLJ | Q2PAJ1 | Crystal Structure of the Zea Mays laccase 3 complexed with coniferyl | |
| 6KLG | Q2PAJ1 | Crystal Structure of the Zea Mays laccase 3 | |
| 6KLI | Q2PAJ1 | Crystal Structure of the Zea Mays laccase 3 complexed with sinapyl | |
| 3VF1 | Q2N410 | Structure of a calcium-dependent 11R-lipoxygenase suggests a mechanism for Ca-regulation | |
| 6CE0 | Q2N0T3 | Crystal structure of a HIV-1 clade B tier-3 isolate H078.14 UFO-BG Env trimer in complex with broadly neutralizing Fabs PGT124 and 35O22 at 4.6 Angstrom | |
| 6E5P | Q2N0S9 | Backbone model based on cryo-EM map at 8.5 A of domain-swapped, glycan-reactive, neutralizing antibody 2G12 bound to HIV-1 Env BG505 DS-SOSIP, which was also bound to CD4-binding site antibody VRC03 | |
| 6V6W | Q2N0S9 | Crystal structure of antibody 438-B11 DSS mutant (Cys98A-100aA) in complex with an uncleaved prefusion optimized (UFO) soluble BG505 trimer and Fab 35O22 | |
| 6B0N | Q2N0S9 | Crystal structure of the cleavage-independent prefusion HIV Env glycoprotein trimer of the clade A BG505 isolate (NFL construct) in complex with Fabs PGT122 and PGV19 at 3.39 A | |
| 6UTK | Q2N0S9 | Crystal structure of 438-B11 Fab in complex with an uncleaved prefusion optimized (UFO) soluble BG505 trimer and Fab 35O22 at 3.80 Angstrom | |
| 6V8X | Q2N0S9 | VRC01 Bound BG505 F14 HIV-1 SOSIP Envelope Trimer Structure | envelope glycoprotein gp120, envelope glycoprotein gp41, VRC01 VH, VRC01 VL |
| 5D9Q | Q2N0S9 | Crystal Structure of the BG505 SOSIP gp140 HIV-1 Env trimer in Complex with the Broadly Neutralizing Fab PGT122 and scFv NIH45-46 | |
| 5WDU | Q2N0S8 | HIV-1 Env BG505 SOSIP.664 H72C-H564C trimer in complex with bNAbs PGT122 Fab, 35O22 Fab and NIH45-46 scFv | |
| 6DFG | Q2N0S8 | BG505 MD39 SOSIP trimer in complex with mature BG18 fragment antigen binding | Envelope glycoprotein gp160, mature BG18 fragment antigen binding heavy chain, mature BG18 fragment antigen binding light chain |
| 8T4K | Q2N0S8 | MD64 N332-GT5 SOSIP | |
| 7T9A | Q2N0S8 | ApexGT2 in complex with GT2-d42.16 and RM20A3 Fabs | |
| 6CDE | Q2N0S7 | Cryo-EM structure at 3.8 A resolution of vaccine-elicited antibody vFP20.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | PGT122 Heavy chain, PGT122 Light Chain, VRC03 Light Chain, VRC03 Heavy Chain, Glycoprotein 41, Glycoprotein 120, vFP20.01 Heavy Chain, vFP20.01 Heavy chain |
| 6MPG | Q2N0S7 | Cryo-EM structure at 3.2 A resolution of HIV-1 fusion peptide-directed antibody, A12V163-b.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122 | A12V163-b.01 Light Chain, Envelope glycoprotein gp41, Envelope glycoprotein gp120, A12V163-b.01 Heavy Chain, PGT122 Heavy chain, PGT122 Light chain, VRC03 heavy chain, VRC03 Light chain |
| 7N65 | Q2N0S7 | Complex structure of HIV superinfection Fab QA013.2 and BG505.SOSIP.664 | |
| 6CUF | Q2N0S7 | Cryo-EM structure at 4.2 A resolution of vaccine-elicited antibody vFP1.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | PGT122 Heavy chain, PGT122 Light Chain, VRC03 Light Chain, VRC03 Heavy Chain, Glycoprotein 41, Glycoprotein 120, vFP20.01 Heavy Chain, vFP20.01 Heavy chain |
| 7LL2 | Q2N0S7 | Cryo-EM structure of BG505 DS-SOSIP in complex with Glycan276-Dependent Broadly Neutralizing Antibody VRC33.01 Fab | |
| 7LL1 | Q2N0S7 | Cryo-EM structure of BG505 DS-SOSIP in complex with glycan276-dependent broadly neutralizing antibody VRC40.01 Fab | |
| 6MN7 | Q2N0S7 | Cryo-EM structure of BG505.SOSIP.664 in complex with BF520.1 antigen binding fragment | Envelope Glycoprotein gp120, Envelope Glycoprotein gp41, BF520.1 Fab variable region |
| 6MPH | Q2N0S7 | Cryo-EM structure at 3.8 A resolution of HIV-1 fusion peptide-directed antibody, DF1W-a.01, elicited by vaccination of Rhesus macaques, in complex with stabilized HIV-1 Env BG505 DS-SOSIP, which was also bound to antibodies VRC03 and PGT122 | DF1W-a.01 heavy chain, DF1W-a.01 Light chain, Envelope glycoprotein gp120, Envelope glycoprotein gp41, PGT122 heavy chain, PGT122 Light Chain, VRC03 Heavy chain, VRC03 Light Chain |
| 6CDI | Q2N0S7 | Cryo-EM structure at 3.6 A resolution of vaccine-elicited antibody vFP16.02 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | VRC03 Heavy Chain, VRC03 light chain, PGT122 Heavy Chain, PGT122 Light Chain, Glycoprotein 120, Glycoprotein gp41, vFP16.02 Heavy Chain, vFP16.02 Light Chain |
| 6CH7 | Q2N0S7 | XFEL crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV-1 Envelope Trimer in complex with the broadly-neutralizing antibodies BG18 and 35O22 | Envelope glycoprotein gp160, 35O22 Heavy Chain, 35O22 Light Chain, BG18 Heavy Chain, BG18 Light Chain |
| 6CH8 | Q2N0S7 | Crystal structure of a natively-glycosylated BG505 SOSIP.664 HIV-1 Envelope Trimer in complex with the broadly-neutralizing antibodies BG18 and 35O22 | |
| 6CM3 | Q2N0S7 | BG505 SOSIP in complex with sCD4, 17b, 8ANC195 | Envelope glycoprotein gp160, T-cell surface glycoprotein CD4, 17b Fab light chain, 17b Fab heavy chain, 8ANC195 Fab heavy chain, 8ANC195 Fab light chain |
| 6CRQ | Q2N0S7 | Glutaraldehyde-treated BG505 SOSIP.664 Env in complex with PGV04 Fab | |
| 6DID | Q2N0S7 | HIV Env BG505 SOSIP with polyclonal Fabs from immunized rabbit #3417 post-boost#1 | Envelope glycoprotein gp160, Monoclonal antibody 10A light chain, Monoclonal antibody 10A heavy chain |
| 6CUE | Q2N0S7 | Cryo-EM structure at 4.0 A resolution of vaccine-elicited antibody vFP7.04 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | PGT122 Heavy chain, PGT122 Light Chain, VRC03 Light Chain, VRC03 Heavy Chain, Glycoprotein 41, Glycoprotein 120, vFP20.01 Heavy Chain, vFP20.01 Heavy chain |
| 6N1W | Q2N0S7 | Cryo-EM structure at 4.2 A resolution of vaccine-elicited antibody DFPH-a.15 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | Envelope glycoprotein gp120, DFPH-a.15 heavy chain, DFPH-a.15 Light chain, Envelope glycoprotein gp41, PGT122 Light chain, PGT122 Heavy chain, VRC03 Light chain, VRC03 Heavy chain |
| 6UM6 | Q2N0S7 | Cryo-EM structure of HIV-1 neutralizing antibody DH270.6 in complex with CH848 10.17DT Env | Envelope glycoprotein gp120, DH270.6 Fab, Envelope glycoprotein gp41 |
| 6UM7 | Q2N0S7 | Cryo-EM structure of vaccine-elicited HIV-1 neutralizing antibody DH270.mu1 in complex with CH848 10.17DT Env | Envelope glycoprotein gp41, Envelope glycoprotein gp120, DH270.mu1 Fab Heavy Chain, DH270.mu1 Fab Light chain |
| 6DE7 | Q2N0S7 | Crystal Structure at 4.3 A Resolution of Glycosylated HIV-1 Clade A BG505 SOSIP.664 Prefusion Env Trimer with Interdomain Stabilization 113C-429GCG in Complex with Broadly Neutralizing Antibodies PGT122 and 35O22 | |
| 6MAR | Q2N0S7 | HIV-1 Envelope Glycoprotein Clone BG505 delCT N332T in complex with broadly neutralizing antibody Fab PGT151 | Immunoglobulin G PGT151 Fab, Heavy chain, Immunoglobulin G PGT151, Light chain, Envelope glycoprotein gp160 |
| 6UM5 | Q2N0S7 | Cryo-EM structure of HIV-1 neutralizing antibody DH270 UCA3 in complex with CH848 10.17DT Env | Envelope glycoprotein gp41, Envelope glycoprotein gp120, DH270 UCA3 Fab heavy chain, DH270 UCA3 Fab light chain |
| 6V8Z | Q2N0S7 | VRC03 and 10-1074 Bound BG505 F14 HIV-1 SOSIP Envelope Trimer Structure | envelope glycoprotein gp120, envelope glycoprotein gp41, VRC03 VH, 10-1074 VH, 10-1074 VL, VRC03 VL |
| 8DOW | Q2N0S7 | Cryo-EM structure of HIV-1 Env(CH848 10.17 DS.SOSIP_DT) in complex with DH1030.1 Fab |
