GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | December 03, 2025 |
| PDB ID | UniProt ID | Title | Descriptor |
|---|---|---|---|
| 6BGT | Q7Z3Y4 | Structure of Trastuzumab Fab mutant in complex with Her2 extracellular domain | |
| 6BGT | P0DOX5 | Structure of Trastuzumab Fab mutant in complex with Her2 extracellular domain | |
| 6BGT | P0DOX5 | Structure of Trastuzumab Fab mutant in complex with Her2 extracellular domain | |
| 6BGT | P04626 | Structure of Trastuzumab Fab mutant in complex with Her2 extracellular domain | |
| 6BIJ | P01903 | HLA-DRB1 in complex with citrullinated fibrinogen peptide | |
| 6BIJ | P13760 | HLA-DRB1 in complex with citrullinated fibrinogen peptide | |
| 6BIJ | 6BIJ | HLA-DRB1 in complex with citrullinated fibrinogen peptide | |
| 6BIV | P13760 | HLA-DRB1 in complex with citrullinated LL37 peptide | |
| 6BIV | P01903 | HLA-DRB1 in complex with citrullinated LL37 peptide | |
| 6BIV | 6BIV | HLA-DRB1 in complex with citrullinated LL37 peptide | |
| 6BIX | P01903 | HLA-DRB1 in complex with citrullinated LL37 peptide | |
| 6BIX | Q29890 | HLA-DRB1 in complex with citrullinated LL37 peptide | |
| 6BIX | 6BIX | HLA-DRB1 in complex with citrullinated LL37 peptide | |
| 6BKT | A0A0Y0S9M3 | Crystal structure of the A/Michigan/15/2014 (H3N2) influenza virus hemagglutinin in complex with 6'-SLN | |
| 6BL3 | Q05769 | Crystal Complex of Cyclooxygenase-2 with indomethacin-butyldiamine-dansyl conjugate | |
| 6BMS | F1QXD3 | Palmitoyltransferase structure | |
| 6BYG | Q8PI23 | Crystal structure of the nucleophile mutant (E575A) of the GH2 exo-beta-mannanase from Xanthomonas axonopodis pv. citri | |
| 6C2W | P00734 | Crystal structure of human prothrombin mutant S101C/A470C | |
| 6C5K | Q99LC4 | S25-23 Fab in complex with Chlamydiaceae LPS (Crystal form 2) | |
| 6C5K | 6C5K | S25-23 Fab in complex with Chlamydiaceae LPS (Crystal form 2) | |
| 6C5K | Q99LC4 | S25-23 Fab in complex with Chlamydiaceae LPS (Crystal form 2) | |
| 6C5K | 6C5K | S25-23 Fab in complex with Chlamydiaceae LPS (Crystal form 2) | |
| 6C5K | A0A0F7R5U8 | S25-23 Fab in complex with Chlamydiaceae LPS (Crystal form 2) | |
| 6C5K | A0A0F7R5U8 | S25-23 Fab in complex with Chlamydiaceae LPS (Crystal form 2) | |
| 6C5M | A0A0R4J090 | Structure of glycolipid aGSA[8,9] in complex with mouse CD1d | |
| 6C5M | P01887 | Structure of glycolipid aGSA[8,9] in complex with mouse CD1d | |
| 6C6J | A0A0R4J090 | Structure of glycolipid aGSA[8,P5p] in complex with mouse CD1d | Antigen-presenting glycoprotein CD1d1, Beta-2-microglobulin |
| 6C6J | P01887 | Structure of glycolipid aGSA[8,P5p] in complex with mouse CD1d | Antigen-presenting glycoprotein CD1d1, Beta-2-microglobulin |
| 6CDE | Q2N0S7 | Cryo-EM structure at 3.8 A resolution of vaccine-elicited antibody vFP20.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | PGT122 Heavy chain, PGT122 Light Chain, VRC03 Light Chain, VRC03 Heavy Chain, Glycoprotein 41, Glycoprotein 120, vFP20.01 Heavy Chain, vFP20.01 Heavy chain |
| 6CDE | Q2N0S5 | Cryo-EM structure at 3.8 A resolution of vaccine-elicited antibody vFP20.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | PGT122 Heavy chain, PGT122 Light Chain, VRC03 Light Chain, VRC03 Heavy Chain, Glycoprotein 41, Glycoprotein 120, vFP20.01 Heavy Chain, vFP20.01 Heavy chain |
| 6CDE | 6CDE | Cryo-EM structure at 3.8 A resolution of vaccine-elicited antibody vFP20.01 in complex with HIV-1 Env BG505 DS-SOSIP, and antibodies VRC03 and PGT122 | PGT122 Heavy chain, PGT122 Light Chain, VRC03 Light Chain, VRC03 Heavy Chain, Glycoprotein 41, Glycoprotein 120, vFP20.01 Heavy Chain, vFP20.01 Heavy chain |
| 6CS0 | P59594 | SARS Spike Glycoprotein, Trypsin-cleaved, Stabilized variant, one S1 CTD in an upwards conformation | Spike glycoprotein,Envelope glycoprotein |
| 6CS0 | D9IEJ2 | SARS Spike Glycoprotein, Trypsin-cleaved, Stabilized variant, one S1 CTD in an upwards conformation | Spike glycoprotein,Envelope glycoprotein |
| 6D5D | 6D5D | Structure of Caldicellulosiruptor danielii GH48 module of glycoside hydrolase WP_045175321 | |
| 6D5P | P00800 | Hexagonal thermolysin cryocooled to 100 K with 20% xylose as cryoprotectant | |
| 6D8W | G0Z9B7 | Crystal structure of InvbI.18715.a.KN11: Influenza hemagglutinin from strain A/Jiangsu/ALSI/2011 | |
| 6DBS | A4GRC6 | Fusion surface structure, function, and dynamics of gamete fusogen HAP2 | |
| 6DC3 | P03420 | RSV prefusion F bound to RSD5 Fab | |
| 6DC3 | M1E1E4 | RSV prefusion F bound to RSD5 Fab | |
| 6DC3 | 6DC3 | RSV prefusion F bound to RSD5 Fab | |
| 6DC3 | P03420 | RSV prefusion F bound to RSD5 Fab | |
| 6DC3 | M1E1E4 | RSV prefusion F bound to RSD5 Fab | |
| 6DC3 | 6DC3 | RSV prefusion F bound to RSD5 Fab | |
| 6DC3 | Q6N089 | RSV prefusion F bound to RSD5 Fab | |
| 6DC3 | Q6N089 | RSV prefusion F bound to RSD5 Fab | |
| 6DC3 | Q8N355 | RSV prefusion F bound to RSD5 Fab | |
| 6DC3 | Q8N355 | RSV prefusion F bound to RSD5 Fab | |
| 6DD5 | P0AEY0 | Crystal Structure of the Cas6 Domain of Marinomonas mediterranea MMB-1 Cas6-RT-Cas1 Fusion Protein | |
| 6DD5 | F2K1V9 | Crystal Structure of the Cas6 Domain of Marinomonas mediterranea MMB-1 Cas6-RT-Cas1 Fusion Protein | |
| 6DUS | A0A0H3NMP8 | Structure of Salmonella Effector SseK3 E258Q mutant |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
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Last updated: August 4, 2025