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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | December 11, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 8BEC | P0DTC2 | Crystal structure of the SARS-CoV-2 S RBD in complex with pT1375 scFV | |
| 8EYG | P0DTC2 | SARS-CoV-2 spike protein complexed with two nanobodies | |
| 8EYH | P0DTC2 | SARS-CoV-2 spike protein bound with a nanobody | |
| 8PQ2 | P0DTC2 | XBB 1.0 RBD bound to P4J15 (Local) | |
| 8PSD | P0DTC2 | SARS-CoV-2 XBB 1.0 closed conformation. | |
| 8J1V | P0DTC2 | Cryo-EM structure of SARS-CoV2 Omicron BA.5 spike in complex with 8-9D Fabs | |
| 8UUL | P0DTC2 | Prototypic SARS-CoV-2 spike (containing K417) in the closed conformation | |
| 8UUM | P0DTC2 | Prototypic SARS-CoV-2 spike (containing K417) in the open conformation | |
| 8UUN | P0DTC2 | Prototypic SARS-CoV-2 spike (containing V417) in the closed conformation | |
| 8UUO | P0DTC2 | Prototypic SARS-CoV-2 spike (containing V417) in the open conformation | |
| 8WRH | P0DTC2 | SARS-CoV-2 XBB.1.5.70 in complex with ACE2 | |
| 8WRL | P0DTC2 | XBB.1.5 RBD in complex with ACE2 | |
| 8JYK | P0DTC2 | Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 1) | |
| 8JYM | P0DTC2 | Structure of the SARS-CoV-2 XBB.1.5 spike glycoprotein (closed state 2) | |
| 8JYN | P0DTC2 | Structure of SARS-CoV-2 XBB.1.5 spike glycoprotein in complex with ACE2 (1-up state) | |
| 8JYO | P0DTC2 | Structure of SARS-CoV-2 XBB.1.5 spike glycoprotein in complex with ACE2 (2-up state) | |
| 8JYP | P0DTC2 | Structure of SARS-CoV-2 XBB.1.5 spike RBD in complex with ACE2 | |
| 8G73 | P0DTC2 | SARS-CoV-2 spike/Nb3 complex with 2 RBDs up and 3 Nb3 bound at 2.5 A | |
| 8G74 | P0DTC2 | SARS-CoV-2 spike/Nb3 complex with 1 RBD up and 2 Nb3 | |
| 8G75 | P0DTC2 | SARS-CoV-2 spike/Nb4 complex with 2 RBDs up and 3 Nb4 bound | |
| 8THF | P0DTC2 | SARS-CoV-2 BA.1 S-6P-no-RBD | |
| 6XE1 | P0DTC2 | Structure of SARS-CoV-2 spike protein receptor binding domain in complex with a potent neutralizing antibody, CV30 Fab | |
| 6XF5 | P0DTC2 | Cryo-EM structure of a biotinylated SARS-CoV-2 spike probe in the prefusion state (RBDs down) | |
| 6XKL | P0DTC2 | SARS-CoV-2 HexaPro S One RBD up | |
| 6ZP7 | P0DTC2 | SARS-CoV-2 spike in prefusion state (flexibility analysis, 1-up open conformation) | |
| 7AD1 | P0DTC2 | Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(One up trimer) | |
| 7AD1 | P0DTC2 | Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(One up trimer) | |
| 7B17 | P0DTC2 | SARS-CoV-spike RBD bound to two neutralising nanobodies. | |
| 7BEP | P0DTC2 | Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in a ternary complex with COVOX-384 and S309 Fabs | |
| 7BZ5 | P0DTC2 | Structure of COVID-19 virus spike receptor-binding domain complexed with a neutralizing antibody | |
| 7CN9 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Spike ectodomain | |
| 7CZQ | P0DTC2 | S protein of SARS-CoV-2 in complex bound with P2B-1A10 | |
| 7CZU | P0DTC2 | S protein of SARS-CoV-2 in complex bound with P5A-1B6_2B | |
| 7D0D | P0DTC2 | S protein of SARS-CoV-2 in complex bound with P5A-3C12_2B | |
| 7DX9 | P0DTC2 | Trypsin-digested S protein of SARS-CoV-2 bound with PD of ACE2 in the conformation 3 (3 up RBD and 2 PD bound) | |
| 7EB5 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Spike D614G variant, two RBD-up conformation 2 | |
| 7EYA | P0DTC2 | Local CryoEM structure of the SARS-CoV-2 S6PV2 in complex with BD-804 Fab | |
| 7KDG | P0DTC2 | SARS-CoV-2 RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS) | |
| 7KDK | P0DTC2 | SARS-CoV-2 D614G 3 RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G) | |
| 7KE8 | P0DTC2 | SARS-CoV-2 D614G 3 RBD down Spike Protein Trimer without the P986-P987 stabilizing mutations (S-GSAS-D614G sub-classification) | |
| 7L2D | P0DTC2 | Cryo-EM structure of NTD-directed neutralizing antibody 1-87 in complex with prefusion SARS-CoV-2 spike glycoprotein | |
| 7LM8 | P0DTC2 | Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with two cross-neutralizing antibodies CV38-142 and COVA1-16 Fabs isolated from COVID-19 patients | |
| 7LXZ | P0DTC2 | SARS-CoV-2 S/S2M11/S2L28 Global Refinement | |
| 7LY0 | P0DTC2 | SARS-CoV-2 S/S2M11/S2M28 Local Refinement | |
| 7LYP | P0DTC2 | South African (B.1.351) SARS-CoV-2 spike protein variant (S-GSAS-B.1.351) in the 1-RBD-up conformation | |
| 7EKE | P0DTC2 | Structure of SARS-CoV-2 spike receptor-binding domain F486L mutation complexed with human ACE2 | |
| 7K9K | P0DTC2 | SARS-CoV-2 Spike RBD in complex with neutralizing Fab 2H04 (local refinement) | |
| 7MZF | P0DTC2 | SARS-CoV-2 receptor binding domain bound to Fab PDI 37 | |
| 7MZL | P0DTC2 | SARS-CoV-2 receptor binding domain bound to Fab PDI 210 | |
| 7SXW | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K,K417T mutant spike protein ectodomain |
