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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | December 11, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 7PQZ | P0DTC2 | Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with FI-3A and FD-11A Fabs | |
| 7PR0 | P0DTC2 | Crystal structure of the receptor binding domain of SARS-CoV-2 Spike glycoprotein in complex with FD-5D Fab | |
| 7SC1 | P0DTC2 | Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, R40-1G8 | |
| 7TLY | P0DTC2 | SARS-CoV-2 S B.1.1.529 Omicron variant (RBD + S309 Local Refinement) | |
| 7TLZ | P0DTC2 | SARS-CoV-2 S NTD B.1.1.529 Omicron variant + S309 Local Refinement | |
| 7TM0 | P0DTC2 | SARS-CoV-2 S B.1.1.529 Omicron variant + S309 + S2L20 Global Refinement | |
| 7TN0 | P0DTC2 | SARS-CoV-2 Omicron RBD in complex with human ACE2 and S304 Fab and S309 Fab | |
| 7X1M | P0DTC2 | The complex structure of Omicron BA.1 RBD with BD604, S309,and S304 | |
| 7XAZ | P0DTC2 | Crystal structure of Omicron BA.1.1 RBD complexed with hACE2 | |
| 7XB0 | P0DTC2 | Crystal structure of Omicron BA.2 RBD complexed with hACE2 | |
| 7XB1 | P0DTC2 | Crystal structure of Omicron BA.3 RBD complexed with hACE2 | |
| 7Y42 | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 spike glycoprotein in complex with all-trans retinoic acid | |
| 8CWU | P0DTC2 | Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with a cross-neutralizing nanobody 1-21 | |
| 8CWV | P0DTC2 | Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with a cross-neutralizing nanobody 2-31 and a human antibody CC12.1 Fab | |
| 8CXN | P0DTC2 | SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-57 | |
| 8CY7 | P0DTC2 | SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-34 | |
| 8CYA | P0DTC2 | SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 2-67 | |
| 8CYB | P0DTC2 | SARS-CoV-2 Spike protein in complex with a pan-sarbecovirus nanobody 1-8 | |
| 8DCC | P0DTC2 | SARS-CoV-2 Receptor-Binding Domain SPEEDesign Immunogen 3 Bound to P2B-2F6 Fab | |
| 8DLK | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Alpha (B.1.1.7) spike protein in complex with human ACE2 (focused refinement of RBD and ACE2) | |
| 7WSH | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike receptor-binding domain in complex with sea lion ACE2 | |
| 7WOQ | P0DTC2 | The state 1 of Omicron Spike with bispecific antibody FD01 | |
| 7WOR | P0DTC2 | The state 2 of Omicron Spike with bispecific antibody FD01 | |
| 7WOS | P0DTC2 | The state 3 of Omicron Spike with bispecific antibody FD01 | |
| 7WOU | P0DTC2 | The state 4 of Omicron Spike with bispecific antibody FD01 | |
| 7WOV | P0DTC2 | The state 5 of Omicron Spike with bispecific antibody FD01 | |
| 7Y75 | P0DTC2 | SIT1-ACE2-BA.2 RBD | |
| 8DV1 | P0DTC2 | SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to linker variant of affinity matured ACE2 mimetic CVD432 | |
| 8DV2 | P0DTC2 | SARS-CoV-2 Wuhan-hu-1-Spike-RBD bound to computationally engineered ACE2 mimetic CVD293 | |
| 8H00 | P0DTC2 | SARS-CoV-2 Omicron BA.1 Spike glycoprotein in complex with rabbit monoclonal antibody 1H1 Fab in the class 1 conformation | |
| 8H01 | P0DTC2 | SARS-CoV-2 Omicron BA.1 Spike glycoprotein in complex with rabbit monoclonal antibody 1H1 Fab in class 2 conformation | |
| 8ITU | P0DTC2 | SARS-CoV-2 Omicron BA.1 Spike glycoprotein in complex with rabbit monoclonal antibody 1H1 IgG. | |
| 7Y71 | P0DTC2 | SARS-CoV-2 spike glycoprotein trimer complexed with Fab fragment of anti-RBD antibody E7 | |
| 8DPZ | P0DTC2 | Local refinement of SARS-CoV-2 vaccine induced antibody DH1338 bound to SARS-CoV-2 HexaPro RBD Spike ectodomain | |
| 8DTK | P0DTC2 | Structure of RBD directed antibody DH1047 in complex with SARS-CoV-2 spike: Local refinement of RBD-Fab interace | |
| 7Y3O | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with human antibody BIOLS56 | |
| 8JJE | P0DTC2 | RBD of SARS-CoV2 spike protein with ACE2 decoy | |
| 8JJE | P0DTC2 | RBD of SARS-CoV2 spike protein with ACE2 decoy | |
| 8K5H | P0DTC2 | Structure of the SARS-CoV-2 BA.1 spike with UT28-RD | |
| 8C89 | P0DTC2 | SARS-CoV-2 spike in complex with the 17T2 neutralizing antibody Fab fragment (local refinement of RBD and Fab) | |
| 8HXJ | P0DTC2 | BANAL-20-52 Spike trimer | |
| 8XLM | P0DTC2 | Structure of the SARS-CoV-2 EG.5.1 spike glycoprotein in complex with ACE2 (1-up state) | |
| 8XLN | P0DTC2 | Structure of the SARS-CoV-2 EG.5.1 spike RBD in complex with ACE2 | |
| 8XBF | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-BQ.1 in complex with antibody O5C2 | |
| 8XXW | P0DTC2 | Fab M2-7 complexed with SARS-Cov2 RBD and human ACE2 | |
| 8WHZ | P0DTC2 | BA.2.86 RBD in complex with hACE2 (local refinement) | |
| 8X4Z | P0DTC2 | BA.2.86 Spike Trimer with ins483V mutation (3 RBD down) | |
| 8X50 | P0DTC2 | BA.2.86 Spike Trimer with ins483V mutation (1 RBD up) | |
| 8X55 | P0DTC2 | BA.2.86 Spike Trimer with T356K mutation (3 RBD down) | |
| 8X56 | P0DTC2 | BA.2.86 Spike Trimer with T356K mutation (1 RBD up) |
