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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | December 11, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 7W8S | P0DTC2 | Structure of SARS-CoV-2 spike receptor-binding domain Y453F mutation complexed with American mink ACE2 | |
| 7WM0 | P0DTC2 | Cryo-EM structure of the Omicron RBD in complex with 35B5 Fab( local refinement of the RBD and 35B5 Fab) | |
| 7X7T | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike protein in complex with three nAbs X01, X10 and X17 | |
| 7X7U | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Delta variant spike protein in complex with three nAbs X01, X10 and X17 | |
| 7ZBU | P0DTC2 | CryoEM structure of SARS-CoV-2 spike monomer in complex with neutralising antibody P008_60 | |
| 8DLO | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein | |
| 8DLP | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein in complex with human ACE2 | |
| 8DLQ | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein in complex with human ACE2 (focused refinement of RBD and ACE2) | |
| 8DLR | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Gamma (P.1) spike protein in complex with Fab 4-8 (focused refinement of NTD and 4-8) | |
| 7WBH | P0DTC2 | overall structure of hu33 and spike | |
| 7S83 | P0DTC2 | Crystal structure of SARS CoV-2 Spike Receptor Binding Domain in complex with shark neutralizing VNARs ShAb01 and ShAb02 | |
| 7SWW | P0DTC2 | SARS-CoV-2 Spike NTD in complex with neutralizing Fab SARS2-57 (local refinement) | |
| 7SWX | P0DTC2 | SARS-CoV-2 Spike in complex with neutralizing Fab SARS2-57 (three down conformation) | |
| 7U9O | P0DTC2 | SARS-CoV-2 spike trimer RBD in complex with Fab NE12 | |
| 7U9P | P0DTC2 | SARS-CoV-2 spike trimer RBD in complex with Fab NA8 | |
| 7XMX | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike glycoprotein in complex with three F61 Fab | |
| 7XMZ | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike glycoprotein in complex with three D2 Fab | |
| 7XST | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron spike glycoprotein in complex with three F61 Fab and three D2 Fab | |
| 8BH5 | P0DTC2 | SARS-CoV-2 BA.2.12.1 RBD in complex with Beta-27 Fab and C1 nanobody | |
| 8HHX | P0DTC2 | SARS-CoV-2 Delta Spike in complex with FP-12A | |
| 8HHY | P0DTC2 | SARS-CoV-2 Delta Spike in complex with IS-9A | |
| 7UL0 | P0DTC2 | Crystal structure of SARS-CoV-2 RBD in complex with the ridge-binding nAb EH8 isolated from a nonvaccinated pediatric patient | |
| 7UL1 | P0DTC2 | Crystal structure of SARS-CoV-2 RBD in complex with the neutralizing IGHV3-53-encoded antibody EH3 isolated from a nonvaccinated pediatric patient | |
| 7WP8 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 recombinant spike protein STFK1628x in complex with three neutralizing antibodies | |
| 7ZRV | P0DTC2 | cryo-EM structure of omicron spike in complex with de novo designed binder, full map | |
| 8BEV | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike (HexaPro variant) in complex with nanobody W25 (map 3, focus refinement on RBD, W25 and adjacent NTD) | |
| 8BGG | P0DTC2 | Cryo-EM structure of SARS-CoV-2 spike (Omicron BA.1 variant) in complex with nanobody W25 (map 5, focus refinement on RBD, W25 and adjacent NTD) | |
| 8AQW | P0DTC2 | BA.4/5 SARS-CoV-2 Spike bound to mouse ACE2 (local) | |
| 7X93 | P0DTC2 | The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab765 | |
| 7X94 | P0DTC2 | The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab712 | |
| 7X95 | P0DTC2 | The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab709 | |
| 7X96 | P0DTC2 | The SARS-CoV-2 receptor binding domain bound with the Fab fragment of a human neutralizing antibody Ab847 | |
| 8C3V | P0DTC2 | SARS-CoV-2 Delta-RBD complexed with BA.2-13 Fab and C1 nanobody | |
| 8D0Z | P0DTC2 | S728-1157 IgG in complex with SARS-CoV-2-6P-Mut7 Spike protein (focused refinement) | |
| 8H3D | P0DTC2 | Structure of apo SARS-CoV-2 spike protein with one RBD up | |
| 8H3E | P0DTC2 | Complex structure of a small molecule (SPC-14) bound SARS-CoV-2 spike protein, closed state | |
| 8CWI | P0DTC2 | Fab arm of antibody 10G4 bound to CoV-2 receptor binding domain (RBD) | |
| 8CWK | P0DTC2 | Fab arm of antibodies 4G1-C2 and 10G4 bound to CoV-2 receptor binding domain (RBD) | |
| 8DNN | P0DTC2 | Crystal structure of neutralizing antibody 80 in complex with SARS-CoV-2 receptor binding domain | |
| 8GB5 | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody 25F9 | |
| 8GB6 | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody 21B6 | |
| 8GB7 | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody 20A7 | |
| 8GB8 | P0DTC2 | Crystal structure of SARS-CoV-2 BA.2 receptor binding domain in complex with neutralizing antibody 20A7 | |
| 8IOS | P0DTC2 | Structure of the SARS-CoV-2 XBB.1 spike glycoprotein (closed-1 state) | |
| 8IOT | P0DTC2 | Structure of the SARS-CoV-2 XBB.1 spike glycoprotein (closed-2 state) | |
| 8IOU | P0DTC2 | Structure of SARS-CoV-2 XBB.1 spike glycoprotein in complex with ACE2 (1-up state) | |
| 8IOV | P0DTC2 | Structure of SARS-CoV-2 XBB.1 spike RBD in complex with ACE2 | |
| 8EDF | P0DTC2 | Bovine Fab SKD in complex with Sars COV-2 receptor binding domain | |
| 8H6F | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Spike protein in complex with A6 repebody | |
| 8HGL | P0DTC2 | SARS-CoV-2 spike in complex with neutralizing antibody NIV-11 |
