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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | December 11, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 8S9G | P0DTC2 | SARS-CoV-2 BN.1 spike RBD bound to the human ACE2 ectodomain and the S309 neutralizing antibody Fab fragment | |
| 8HPF | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.2 RBD in complex with fab L4.65 and L5.34 | |
| 8HPU | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.4 RBD in complex with fab L4.65 and L5.34 | |
| 8HQ7 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron Prototype RBD in complex with fab L4.65 and L5.34 | |
| 8HRD | P0DTC2 | Crystal structure of the receptor binding domain of SARS-CoV-2 Delta variant in complex with IMCAS74 Fab and W14 Fab | |
| 8OYU | P0DTC2 | Stabilised BA.1 SARS-CoV-2 spike with H6 nanobodies in '2 up 1 down' RBD conformation | |
| 8ZBY | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (x2-4P) in complex with 3 D1F6 Fabs (0 RBD up) | |
| 8ZBZ | P0DTC2 | SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up) | |
| 8ZC0 | P0DTC2 | SARS-CoV-2 Omicron BA.2 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up) | |
| 8ZC3 | P0DTC2 | SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (1 RBD up) | |
| 8ZC4 | P0DTC2 | SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with 3 D1F6 Fabs (2 RBD up) | |
| 8ZC5 | P0DTC2 | SARS-CoV-2 Omicron BA.4 spike trimer (6P) in complex with D1F6 Fab, focused refinement of RBD region | |
| 8HLC | P0DTC2 | S protein of SARS-CoV-2 in complex with 3711 | |
| 8HLD | P0DTC2 | S protein of SARS-CoV-2 in complex with 26434 | |
| 9AYW | P0DTC2 | SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 1 (S-GSAS-Omicron-EG.5.1) | |
| 9AYX | P0DTC2 | SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 2 (S-GSAS-Omicron-EG.5.1) | |
| 9AYY | P0DTC2 | SARS-CoV-2 Omicron-EG.5.1 3-RBD down Spike Protein Trimer 3 (S-GSAS-Omicron-EG.5.1) | |
| 9FGS | P0DTC2 | SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv41N (focused refinement) | |
| 9FGT | P0DTC2 | SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76 (focused refinement) | |
| 9FGU | P0DTC2 | SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76-77 (focused refinement) | |
| 8Y4A | P0DTC2 | BA.2.86 S-trimer in complex with Nab XG2v046 | |
| 7EFR | P0DTC2 | Structure of SARS-CoV-2 spike receptor-binding domain in complex with high affinity ACE2 mutant (T27W,N330Y) | |
| 7EKC | P0DTC2 | Structure of SARS-CoV-2 Gamma variant spike receptor-binding domain complexed with human ACE2 | |
| 7EKF | P0DTC2 | Structure of SARS-CoV-2 Alpha variant spike receptor-binding domain complexed with human ACE2 | |
| 7EKG | P0DTC2 | Structure of SARS-CoV-2 Beta variant spike receptor-binding domain complexed with human ACE2 | |
| 7MZG | P0DTC2 | SARS-CoV-2 receptor binding domain bound to Fab PDI 42 | |
| 7MZN | P0DTC2 | SARS-CoV-2 receptor binding domain bound to Fab PDI 231 | |
| 7S4S | P0DTC2 | Crystal Structure of SARS-CoV-2 S receptor-binding domain (RBD) in complex CoV11 Fab | |
| 7SXT | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G,N501Y mutant spike protein ectodomain | |
| 7SY4 | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 D614G,N501Y,E484K mutant spike protein ectodomain bound to human ACE2 ectodomain (focused refinement of RBD and ACE2) | |
| 7V7F | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), one RBD-up conformation 2 | |
| 7V7G | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), two RBD-up conformation | |
| 7V7J | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Kappa variant (B.1.617.1), dimer of S trimer conformation 3 | |
| 7V7P | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), one RBD-up conformation 2 | |
| 7V7Q | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), one RBD-up conformation 3 | |
| 7V7U | P0DTC2 | Cryo-EM structure of SARS-CoV-2 S-Delta variant (B.1.617.2), two RBD-up conformation 2 | |
| 7E9P | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab(state2, local refinement of the RBD and 35B5 Fab) | |
| 7F46 | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 S-6P in complex with 35B5 Fab (state1, local refinement of the RBD, NTD and 35B5 Fab) | |
| 7RBY | P0DTC2 | Crystal structure of Nanobody nb112 and SARS-CoV-2 RBD | |
| 7WPE | P0DTC2 | SARS-CoV-2 Omicron Variant S Trimer complexed with two JMB2002 Fab | |
| 7WUH | P0DTC2 | SARS-CoV-2 Spike in complex with Fab of m31A7 | |
| 7Z1A | P0DTC2 | Nanobody H11 and F2 bound to RBD | |
| 7Z1B | P0DTC2 | Nanobody H11-A10 and F2 bound to RBD | |
| 7Z1C | P0DTC2 | Nanobody H11-B5 and H11-F2 bound to RBD | |
| 7Z1D | P0DTC2 | Nanobody H11-H6 bound to RBD | |
| 7Z1E | P0DTC2 | Nanobody H11-H4 Q98R H100E bound to RBD | |
| 7RBU | P0DTC2 | SARS-CoV-2 Spike in complex with PVI.V6-14 Fab | |
| 7RBV | P0DTC2 | SARS-CoV-2 Spike in complex with PVI.V6-14 Fab | |
| 7U2D | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody ADG20 | |
| 7U2E | P0DTC2 | Crystal structure of SARS-CoV-2 receptor binding domain in complex with neutralizing antibody ADI-55688 |
