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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | December 11, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 7URQ | P0DTC2 | Crystal Structure of SARS-CoV-2 S delta variant receptor-binding domain (RBD) in complex CoV11 Fab crystal form 1 | |
| 7URS | P0DTC2 | Crystal Structure of SARS-CoV-2 S delta variant receptor-binding domain (RBD) in complex CoV11 Fab crystal form 2 | |
| 7WE7 | P0DTC2 | SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv282 | |
| 7WE8 | P0DTC2 | SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv265 | |
| 7WE9 | P0DTC2 | SARS-CoV-2 Omicron variant spike protein in complex with Fab XGv289 | |
| 7WEA | P0DTC2 | SARS-CoV-2 Omicron variant spike protein in complex with two XGv347 binding to one close state RBD and one open state RBD | |
| 7WEB | P0DTC2 | SARS-CoV-2 Omicron variant spike protein with two XGv347 binding to two open state RBDs | |
| 7WEC | P0DTC2 | SARS-CoV-2 Omicron variant spike protein with three XGv347 Fabs binding to three closed state RBDs | |
| 7Z3Z | P0DTC2 | Locked Wuhan SARS-CoV2 Prefusion Spike ectodomain with lipid bound | |
| 7S6I | P0DTC2 | SARS-CoV-2-6P-Mut2 S protein | |
| 7S6J | P0DTC2 | J08 fragment antigen binding in complex with SARS-CoV-2-6P-Mut2 S protein (conformation 1) | |
| 7S6K | P0DTC2 | J08 fragment antigen binding in complex with SARS-CoV-2-6P-Mut2 S protein (conformation 2) | |
| 7S6L | P0DTC2 | J08 fragment antigen binding in complex with SARS-CoV-2-6P-Mut7 S protein (conformation 3) | |
| 7SBU | P0DTC2 | Crystal structure of SARS-CoV-2 spike protein receptor-binding domain in complex with a highly potent antibody J08 Fab | |
| 7WHI | P0DTC2 | The state 2 complex structure of Omicron spike with Bn03 (2-up RBD, 4 nanobodies) | |
| 7WHJ | P0DTC2 | The state 1 complex structure of Omicron spike with Bn03 (1-up RBD, 3 nanobodies) | |
| 7WHK | P0DTC2 | The state 3 complex structure of Omicron spike with Bn03 (2-up RBD, 5 nanobodies) | |
| 7VQ0 | P0DTC2 | Cryo-EM structure of the SARS-CoV-2 spike protein (2-up RBD) bound to neutralizing nanobodies P86 | |
| 7WO4 | P0DTC2 | SARS-CoV-2 Spike in complex with IgG 553-15 (S-553-15 dimer trimer ) | |
| 7WO5 | P0DTC2 | SARS-CoV-2 Spike in complex with IgG 553-15 (S-553-15 trimer) | |
| 7WO7 | P0DTC2 | Locally refined region of SARS-CoV-2 Spike in complex with IgG 553-15 | |
| 7WOA | P0DTC2 | SARS-CoV-2 Spike in complex with IgG 553-60 (1-up trimer) | |
| 7WOB | P0DTC2 | SARS-CoV-2 Spike in complex with IgG 553-60 (2-up trimer) | |
| 7WOC | P0DTC2 | Locally refined region of SARS-CoV-2 Spike in complex with IgG 553-60 | |
| 7WP0 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Delta S6P trimer in complex with neutralizing antibody VacW-209 (local refinement) | |
| 7WP2 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 C.1.2 S6P trimer in complex with neutralizing antibody VacW-209 (local refinement) | |
| 7WZ2 | P0DTC2 | SARS-CoV-2 (D614G) Spike trimer | |
| 7XTZ | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-1 Conformation | |
| 7XU0 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-211 Conformation | |
| 7XU1 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-122 Conformation | |
| 7XU2 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-2 Conformation | |
| 7XU3 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Closed Conformation | |
| 7XU4 | P0DTC2 | Structure of SARS-CoV-2 D614G Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-2 Conformation | |
| 7XU5 | P0DTC2 | Structure of SARS-CoV-2 D614G Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Closed Conformation | |
| 7XU6 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), incubated in Low pH after 40-Day Storage in PBS, Locked-2 Conformation | |
| 7ZCE | P0DTC2 | SARS-CoV-2 Spike protein in complex with the single chain fragment scFv76 | |
| 7ZCF | P0DTC2 | SARS-CoV-2 Spike RBD in complex with the single chain fragment scFv76 (Focused Refinement) | |
| 8GX9 | P0DTC2 | Crystal structure of SARS-CoV-2 RBD with P2C-1F11 and P2B-1G5 | |
| 8ERQ | P0DTC2 | SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324) | |
| 8ERR | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment | |
| 8GS6 | P0DTC2 | Structure of the SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 1) | |
| 7SJ0 | P0DTC2 | Antibody A7V3 bound to N-terminal domain of the spike | |
| 7VHH | P0DTC2 | Delta variant of SARS-CoV-2 Spike protein | |
| 7WQV | P0DTC2 | Crystal structure of a neutralizing monoclonal antibody (Ab08) in complex with SARS-CoV-2 receptor-binding domain (RBD) | |
| 8D48 | P0DTC2 | sd1.040 Fab in complex with SARS-CoV-2 Spike 2P glycoprotein | |
| 8DM1 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein | |
| 8DM2 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein (focused refinement of NTD) | |
| 8DM3 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with Fab 4A8 | |
| 8DM4 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with Fab 4A8 (focused refinement of NTD and 4A8) | |
| 8HC2 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 1 YB9-258 Fab (1 RBD up) |
