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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | April 23, 2025 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 7WP2 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 C.1.2 S6P trimer in complex with neutralizing antibody VacW-209 (local refinement) | |
| 7WZ2 | P0DTC2 | SARS-CoV-2 (D614G) Spike trimer | |
| 7XTZ | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-1 Conformation | |
| 7XU0 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-211 Conformation | |
| 7XU1 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-122 Conformation | |
| 7XU2 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-2 Conformation | |
| 7XU3 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Closed Conformation | |
| 7XU4 | P0DTC2 | Structure of SARS-CoV-2 D614G Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Locked-2 Conformation | |
| 7XU5 | P0DTC2 | Structure of SARS-CoV-2 D614G Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), Closed Conformation | |
| 7XU6 | P0DTC2 | Structure of SARS-CoV-2 Spike Protein with Engineered x3 Disulfide (x3(D427C, V987C) and single Arg S1/S2 cleavage site), incubated in Low pH after 40-Day Storage in PBS, Locked-2 Conformation | |
| 7ZCE | P0DTC2 | SARS-CoV-2 Spike protein in complex with the single chain fragment scFv76 | |
| 7ZCF | P0DTC2 | SARS-CoV-2 Spike RBD in complex with the single chain fragment scFv76 (Focused Refinement) | |
| 8GX9 | P0DTC2 | Crystal structure of SARS-CoV-2 RBD with P2C-1F11 and P2B-1G5 | |
| 8ERQ | P0DTC2 | SARS-CoV-2 BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment (local refinement of the RBD and S2X324) | |
| 8ERR | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike ectodomain trimer in complex with the S2X324 neutralizing antibody Fab fragment | |
| 8GS6 | P0DTC2 | Structure of the SARS-CoV-2 BA.2.75 spike glycoprotein (closed state 1) | |
| 7SJ0 | P0DTC2 | Antibody A7V3 bound to N-terminal domain of the spike | |
| 7VHH | P0DTC2 | Delta variant of SARS-CoV-2 Spike protein | |
| 7WQV | P0DTC2 | Crystal structure of a neutralizing monoclonal antibody (Ab08) in complex with SARS-CoV-2 receptor-binding domain (RBD) | |
| 8D48 | P0DTC2 | sd1.040 Fab in complex with SARS-CoV-2 Spike 2P glycoprotein | |
| 8DM1 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein | |
| 8DM2 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein (focused refinement of NTD) | |
| 8DM3 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with Fab 4A8 | |
| 8DM4 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron BA.2 spike protein in complex with Fab 4A8 (focused refinement of NTD and 4A8) | |
| 8HC2 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 1 YB9-258 Fab (1 RBD up) | |
| 8HC3 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 2 YB9-258 Fabs (2 RBD up) | |
| 8HC4 | P0DTC2 | SARS-CoV-2 wildtype spike trimer (6P) in complex with 3 YB9-258 Fabs and 3 R1-32 Fabs (3 RBD up) | |
| 8HC5 | P0DTC2 | SARS-CoV-2 wildtype S1 in complex with YB9-258 Fab and R1-32 Fab | |
| 8HC6 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with YB9-258 Fab, focused refinement of Fab region | |
| 8HC7 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) complex with YB9-258 Fab, focused refinement of RBD-dimer region | |
| 8HC8 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with YB13-292 Fab, focused refinement of Fab region | |
| 8HC9 | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 3 YB13-292 Fabs (3 RBD down) | |
| 8HCA | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 3 YB13-292 Fabs (1 RBD up) | |
| 8HCB | P0DTC2 | SARS-CoV-2 Omicron BA.1 spike trimer (6P) in complex with 3 YB13-292 Fabs (2 RBD up) | |
| 7WWI | P0DTC2 | SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab in the class 1 conformation | |
| 7WWJ | P0DTC2 | SARS-CoV-2 BA.1 Spike trimer in complex with 55A8 Fab in the class 2 conformation | |
| 7U0Q | P0DTC2 | SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 002-02 | |
| 7U0X | P0DTC2 | SARS-Cov2 S protein structure in complex with neutralizing monoclonal antibody 002-13 | |
| 7WP6 | P0DTC2 | Cryo-EM structure of SARS-CoV-2 recombinant spike protein STFK in complex with three neutralizing antibodies | |
| 7WSC | P0DTC2 | Local structure of BD55-3500 and omicron RBD complex | |
| 7X2H | P0DTC2 | Crystal structure of SARS-CoV-2 spike receptor-binding domain bound with 6-2C Fab | |
| 7XDB | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Omicron Spike protein in complex with BA7208 fab | |
| 7XDK | P0DTC2 | Cryo-EM structure of SARS-CoV-2 Delta Spike protein in complex with BA7054 and BA7125 fab | |
| 7ZSD | P0DTC2 | cryo-EM structure of omicron spike in complex with de novo designed binder, local | |
| 7ZSS | P0DTC2 | cryo-EM structure of D614 spike in complex with de novo designed binder | |
| 8AQS | P0DTC2 | BA.4/5 SARS-CoV-2 Spike bound to human ACE2 (local) | |
| 8AQT | P0DTC2 | Beta SARS-CoV-2 Spike bound to mouse ACE2 (local) | |
| 8AQU | P0DTC2 | BA.1 SARS-CoV-2 Spike bound to mouse ACE2 (local) | |
| 8AQV | P0DTC2 | BA.2.12.1 SARS-CoV-2 Spike bound to mouse ACE2 (local) | |
| 8H5T | P0DTC2 | Crystal structure of SARS-CoV-2 spike receptor-binding domain in complex with neutralizing nanobody Nb-015 |
