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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | November 28, 2024 |
| PDB ID | UniProt ID ▲ | Title | Descriptor |
|---|---|---|---|
| 7K43 | 7K43 | SARS-CoV-2 spike in complex with the S2M11 neutralizing antibody Fab fragment | SARS-CoV-2 spike glycoprotein, S2M11 Fab fragment (heavy chain), S2M11 Fab fragment (light chain) |
| 7K45 | 7K45 | SARS-CoV-2 spike in complex with the S2E12 neutralizing antibody Fab fragment (local refinement of the RBD and Fab variable domains) | |
| 7K4N | 7K4N | SARS-CoV-2 spike in complex with the S2E12 neutralizing antibody Fab fragment | Spike glycoprotein, S2E12 neutralizing antibody Fab fragment (heavy chain), S2E12 neutralizing antibody Fab fragment (light chain) |
| 7K65 | 7K65 | Hedgehog receptor Patched (PTCH1) in complex with conformation selective nanobody TI23 | Protein patched homolog 1, nanobody TI23 |
| 7K66 | 7K66 | Structure of Blood Coagulation Factor VIII in Complex with an Anti-C1 Domain Pathogenic Antibody Inhibitor | |
| 7K80 | 7K80 | KIR3DL1*001 in complex with HLA-A*24:02 presenting the RYPLTFGW peptide | |
| 7K81 | 7K81 | KIR3DL1*005 in complex with HLA-A*24:02 presenting the RYPLTFGW peptide | |
| 7K8M | 7K8M | Structure of the SARS-CoV-2 receptor binding domain in complex with the human neutralizing antibody Fab fragment, C102 | |
| 7K8S | 7K8S | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C002 (state 1) | Spike glycoprotein, C002 Fab Heavy Chain, C002 Fab Light Chain |
| 7K8T | 7K8T | Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C002 (State 2) | Spike glycoprotein, C002 Fab Heavy Chain, C002 Fab Light Chain |
| 7K8U | 7K8U | Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C104 | Spike glycoprotein, C104 Fab Heavy Chain, C104 Fab Light Chain |
| 7K8V | 7K8V | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C110 | Spike glycoprotein, C110 Fab Heavy Chain, C110 Fab Light Chain |
| 7K8W | 7K8W | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C119 | Spike glycoprotein, C119 Fab Light Chain, C119 Fab Heavy Chain |
| 7K8X | 7K8X | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 1) | Spike glycoprotein, C121 Fab Heavy chain, C121 Fab Light chain |
| 7K8Y | 7K8Y | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C121 (State 2) | Spike glycoprotein, C121 Fab Heavy chain, C121 Fab Light chain |
| 7K8Z | 7K8Z | Structure of the SARS-CoV-2 S 2P trimer in complex with the human neutralizing antibody Fab fragment, C135 | Spike glycoprotein, C135 Fab Light Chain, C135 Fab Heavy Chain |
| 7K90 | 7K90 | Structure of the SARS-CoV-2 S 6P trimer in complex with the human neutralizing antibody Fab fragment, C144 | Spike glycoprotein, C144 Fab Heavy Chain, C144 Fab Light Chain |
| 7K93 | 7K93 | DENV2 NS1 in complex with neutralizing 2B7 single chain Fab variable region (scFv) | |
| 7K9H | 7K9H | SARS-CoV-2 Spike in complex with neutralizing Fab 2B04 (one up, two down conformation) | |
| 7K9I | 7K9I | SARS-CoV-2 Spike RBD in complex with neutralizing Fab 2B04 (local refinement) | |
| 7K9J | 7K9J | SARS-CoV-2 Spike in complex with neutralizing Fab 2H04 (three down conformation) | |
| 7K9K | 7K9K | SARS-CoV-2 Spike RBD in complex with neutralizing Fab 2H04 (local refinement) | |
| 7K9Z | 7K9Z | Crystal structure of SARS-CoV-2 receptor binding domain in complex with the Fab fragments of neutralizing antibodies 298 and 52 | |
| 7KBI | 7KBI | Ricin bound to VHH antibody V5E1 | |
| 7KBK | 7KBK | Ricin bound to VHH antibody V6E11 | |
| 7KBT | 7KBT | Factor VIII in complex with the anti-C2 domain antibody, G99 | |
| 7KC1 | 7KC1 | Cryo-EM structure of SRR2899884.46167H+MEDI8852L fab in complex with Victoria HA | |
| 7KC9 | 7KC9 | Ricin bound to VHH antibody V5G1 | |
| 7KCR | 7KCR | Cryo-EM structure of Zika virus in complex with E protein cross-linking human monoclonal antibody ADI30056 | ADI30056 mAb heavy chain, ADI30056 mAb light chain, envelope protein E, membrane protein M |
| 7KD0 | 7KD0 | Ricin bound to VHH antibody V2C11 | |
| 7KD2 | 7KD2 | Ricin bound to VHH antibody V11B2 | |
| 7KD6 | 7KD6 | Insulin Receptor L1-CR plus alphaCT fragment in co-complex with Fv 83-7 and single-chain insulin SCI-b | |
| 7KDD | 7KDD | HCMV postfusion gB in complex with SM5-1 Fab | Envelope glycoprotein B, SM5-1 Fab antibody heavy chain, SM5-1 Fab antibody light chain |
| 7KDE | 7KDE | BG505 SOSIP.664 in complex with the V3-targeting rhesus macaque antibody 1485 and human gp120-gp41 interface antibody 8ANC195 | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, Envelope glycoprotein gp120, Ab 1485 Heavy Chain, Ab 1485 Light Chain, 8ANC195 Fab Heavy Chain, 8ANC195 Fab Light Chain |
| 7KDM | 7KDM | Ricin bound to VHH antibody V5G6 | |
| 7KDU | 7KDU | Ricin bound to VHH antibody V5E4 | |
| 7KEI | 7KEI | DQA1*01:02/DQB1*06:02 in complex with a hemagglutinin peptide from the H1N1 pandemic flu virus. | |
| 7KEJ | 7KEJ | BDBV-289 bound to EBOV GPdMuc Makona | Virion spike glycoprotein, Antibody Fab heavy chain (HC) BDBV-289, Antibody Fab light chain (LC) BDBV-289 |
| 7KEW | 7KEW | Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-43 | Spike glycoprotein 1, BDBV-43 Fab heavy chain, BDBV-43 Fab light chain, Envelope glycoprotein 2 |
| 7KEX | 7KEX | Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-293 | Antibody Fab EBOV-293 light chain, Antibody Fab EBOV-293 heavy chain, Virion spike glycoprotein 1, Virion spike glycoprotein 2 |
| 7KF9 | 7KF9 | Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-296 and EBOV-515 | Antibody Fab EBOV-296 heavy chain, Virion spike glycoprotein 1, Virion spike glycoprotein 2, Antibody Fab EBOV-296 light chain |
| 7KFB | 7KFB | Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-442 | Virion spike glycoprotein 1, Antibody Fab EBOV-442 heavy chain, Antibody Fab EBOV-442 light chain, Virion spike glycoprotein 2 |
| 7KFE | 7KFE | Bundibugyo virus GP (mucin deleted) bound to antibody Fab BDBV-329 | Antibody BDBV-329 heavy chain, Antibody BDBV-329 light chain, Spike glycoprotein 1, Envelope glycoprotein 2 |
| 7KFH | 7KFH | Ebola virus GP (mucin deleted, Makona strain) bound to antibody Fab EBOV-437 | Virion spike glycoprotein, Antibody Fab heavy chain (HC) BDBV-289, Antibody Fab light chain (LC) BDBV-289 |
| 7KFV | 7KFV | Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-B12 Fab) | |
| 7KFW | 7KFW | Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-B3 Fab) | |
| 7KFX | 7KFX | Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-C2 Fab) | |
| 7KFY | 7KFY | Structural basis for a germline-biased antibody response to SARS-CoV-2 (RBD:C1A-F10 Fab) | |
| 7KHF | 7KHF | CryoEM structure of LILRB1 D3D4 domain-inserted antibody MDB1 Fab in complex with Plasmodium RIFIN (PF3D7_1373400) V2 domain | MDB1 Fab heavy chain, MDB1 Fab light chain, Rifin |
| 7KI4 | 7KI4 | Structure of the NiV F glycoprotein in complex with the 12B2 neutralizing antibody | Fusion glycoprotein F0, 12B2 Fab light chain, 12B2 heavy chain |
