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GlycoNAVI Proteins
GlycoNAVI-Proteins is dataset of glycan and protein information. This is the content of GlycoNAVI.
| Source | Last Updated |
|---|---|
| GlycoNAVI Proteins | November 28, 2024 |
| PDB ID | UniProt ID | Title | Descriptor ▼ |
|---|---|---|---|
| 4GBX | 4GBX | Crystal structure of an immune complex at pH 6.5 | HLA class II histocompatibility antigen, DM alpha chain, HLA class II histocompatibility antigen, DM beta chain, HLA class II histocompatibility antigen, DR alpha chain, HLA class II histocompatibility antigen, DRB1-1 beta chain, synthetic peptide |
| 1UVQ | 1UVQ | Crystal structure of HLA-DQ0602 in complex with a hypocretin peptide | HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, OREXIN |
| 1UVQ | P01907 | Crystal structure of HLA-DQ0602 in complex with a hypocretin peptide | HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, OREXIN |
| 1UVQ | 1UVQ | Crystal structure of HLA-DQ0602 in complex with a hypocretin peptide | HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, OREXIN |
| 1UVQ | P01907 | Crystal structure of HLA-DQ0602 in complex with a hypocretin peptide | HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, OREXIN |
| 1UVQ | P03992 | Crystal structure of HLA-DQ0602 in complex with a hypocretin peptide | HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, OREXIN |
| 1UVQ | P03992 | Crystal structure of HLA-DQ0602 in complex with a hypocretin peptide | HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, OREXIN |
| 1UVQ | O43612 | Crystal structure of HLA-DQ0602 in complex with a hypocretin peptide | HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, OREXIN |
| 1UVQ | O43612 | Crystal structure of HLA-DQ0602 in complex with a hypocretin peptide | HLA CLASS II HISTOCOMPATIBILITY ANTIGEN, OREXIN |
| 4I53 | 4I53 | Crystal structure of clade C1086 HIV-1 gp120 core in complex with DMJ-II-121 | HIV-1 glycoprotein |
| 4I54 | 4I54 | Crystal structure of clade A/E 93TH057 HIV-1 gp120 H375S core in complex with DMJ-II-121 | HIV-1 glycoprotein |
| 6U0N | Q2N0S6 | Asymmetrically open conformational state (Class II) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab | HIV-1 envelope glycoprotein gp120, T-cell surface glycoprotein CD4, E51 Fab heavy chain, E51 Fab light chain, HIV-1 envelope glycoprotein gp41 |
| 6U0N | P01730 | Asymmetrically open conformational state (Class II) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab | HIV-1 envelope glycoprotein gp120, T-cell surface glycoprotein CD4, E51 Fab heavy chain, E51 Fab light chain, HIV-1 envelope glycoprotein gp41 |
| 6U0N | 6U0N | Asymmetrically open conformational state (Class II) of HIV-1 Env trimer BG505 SOSIP.664 in complex with sCD4 and E51 Fab | HIV-1 envelope glycoprotein gp120, T-cell surface glycoprotein CD4, E51 Fab heavy chain, E51 Fab light chain, HIV-1 envelope glycoprotein gp41 |
| 5TE4 | 5TE4 | Crystal Structure of Broadly Neutralizing VRC01-class Antibody N6 in Complex with HIV-1 Clade G Strain X2088 gp120 Core | HIV-1 clade G strain X2088 gp120, Heavy chain of antibody N6, Light chain of antibody N6 |
| 3TGS | 3TGS | Crystal structure of HIV-1 clade C strain C1086 gp120 core in complex with NBD-556 | HIV-1 clade C1086 gp120 core |
| 3TGR | 3TGR | Crystal structure of unliganded HIV-1 clade C strain C1086 gp120 core | HIV-1 clade C1086 gp120 |
| 3TGT | 3TGT | Crystal structure of unliganded HIV-1 clade A/E strain 93TH057 gp120 core | HIV-1 clade A/E 93TH057 gp120 |
| 4RWY | 4RWY | Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC131 in complex with HIV-1 clade B YU2 gp120 | HIV-1 YU2 gp120, Antibody 8ANC131 heavy chain, Antibody 8ANC131 light chain |
| 4K0A | 4K0A | Crystal structure of CD4-mimetic miniprotein M48U7 in complex with HIV-1 YU2 gp120 | HIV-1 YU2 gp120 glycoprotein, CD4-MIMETIC MINIPROTEIN M48U7 |
| 4JZZ | 4JZZ | Crystal structure of CD4-mimetic miniprotein M48U1 in complex with HIV-1 YU2 gp120 in C2221 space group | HIV-1 YU2 gp120 glycoprotein, CD4-MIMETIC MINIPROTEIN M48U1 |
| 5A7X | 5A7X | negative stain EM of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195 | HIV-1 YU2 GP120, T-CELL SURFACE GLYCOPROTEIN CD4, FAB OF BROADLY NEUTRALIZING ANTIBODY 17B, FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 |
| 5A7X | P01730 | negative stain EM of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195 | HIV-1 YU2 GP120, T-CELL SURFACE GLYCOPROTEIN CD4, FAB OF BROADLY NEUTRALIZING ANTIBODY 17B, FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 |
| 5A8H | 5A8H | cryo-ET subtomogram averaging of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195 | HIV-1 GP120, T-CELL SURFACE GLYCOPROTEIN CD4, FAB OF BROADLY NEUTRALIZING ANTIBODY 17B, FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 VARIANT G52K5 |
| 5A8H | P01730 | cryo-ET subtomogram averaging of BG505 SOSIP.664 in complex with sCD4, 17b, and 8ANC195 | HIV-1 GP120, T-CELL SURFACE GLYCOPROTEIN CD4, FAB OF BROADLY NEUTRALIZING ANTIBODY 17B, FAB OF BROADLY NEUTRALIZING ANTIBODY 8ANC195 VARIANT G52K5 |
| 7KDE | Q2N0S6 | BG505 SOSIP.664 in complex with the V3-targeting rhesus macaque antibody 1485 and human gp120-gp41 interface antibody 8ANC195 | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, Envelope glycoprotein gp120, Ab 1485 Heavy Chain, Ab 1485 Light Chain, 8ANC195 Fab Heavy Chain, 8ANC195 Fab Light Chain |
| 7KDE | 7KDE | BG505 SOSIP.664 in complex with the V3-targeting rhesus macaque antibody 1485 and human gp120-gp41 interface antibody 8ANC195 | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, Envelope glycoprotein gp120, Ab 1485 Heavy Chain, Ab 1485 Light Chain, 8ANC195 Fab Heavy Chain, 8ANC195 Fab Light Chain |
| 6X9T | Q2N0S6 | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293S cells in complex with RM20A3 Fab | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp120, HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, RM20A3 Fab Heavy Chain, RM20A3 Fab Light Chain |
| 6X9T | 6X9T | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293S cells in complex with RM20A3 Fab | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp120, HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, RM20A3 Fab Heavy Chain, RM20A3 Fab Light Chain |
| 6X9U | Q2N0S6 | HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and partially deglycosylated by endoglycosidase H, in complex with RM20A3 Fab | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp120, HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, RM20A3 Fab Heavy Chain, RM20A3 Fab Light Chain |
| 6X9U | 6X9U | HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and partially deglycosylated by endoglycosidase H, in complex with RM20A3 Fab | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp120, HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, RM20A3 Fab Heavy Chain, RM20A3 Fab Light Chain |
| 6X9V | Q2N0S6 | HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and deglycosylated by endoglycosidase H, in complex with RM20A3 Fab | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp120, HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, RM20A3 Fab Heavy Chain, RM20A3 Fab Light Chain |
| 6X9V | 6X9V | HIV-1 Envelope Glycoprotein BG505 SOSIP.664, expressed in HEK293S cells and deglycosylated by endoglycosidase H, in complex with RM20A3 Fab | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp120, HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, RM20A3 Fab Heavy Chain, RM20A3 Fab Light Chain |
| 6X9R | Q2N0S6 | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293F cells in complex with RM20A3 Fab | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp120, HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, RM20A3 Fab Heavy Chain, RM20A3 Fab Light Chain |
| 6X9R | 6X9R | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in HEK293F cells in complex with RM20A3 Fab | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp120, HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, RM20A3 Fab Heavy Chain, RM20A3 Fab Light Chain |
| 6X9S | Q2N0S6 | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in stable CHO cells in complex with RM20A3 Fab | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp120, HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, RM20A3 Fab Heavy Chain, RM20A3 Fab Light Chain |
| 6X9S | 6X9S | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 expressed in stable CHO cells in complex with RM20A3 Fab | HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp120, HIV-1 Envelope Glycoprotein BG505 SOSIP.664 gp41, RM20A3 Fab Heavy Chain, RM20A3 Fab Light Chain |
| 6P62 | 6P62 | HIV Env BG505 NFL TD+ in complex with antibody E70 fragment antigen binding | HIV-1 Env BG505 NFL TD+, Rabbit monoclonal antibody E70 heavy chain fragment antigen binding, Rabbit monoclonal antibody E70 kappa chain |
| 6NF5 | 6NF5 | BG505 MD64 N332-GT5 SOSIP trimer in complex with BG18-like precursor HMP1 fragmentantigen binding and base-binding RM20A3 fragment antigen binding | HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp120, HIV-1 Env BG505 MD64 N332-GT5 SOSIP gp41, BG18-like precursor HMP1 fragment antigen binding heavy chain, V2-17 protein, base-binding RM20A3 fragment antigen binding heavy chain, base-binding RM20A3 fragment antigen binding light chain |
| 6NC3 | 6NC3 | AMC011 v4.2 SOSIP Env trimer in complex with fusion peptide targeting antibody VRC34 fragment antigen binding | HIV-1 Env AMC011 v4.2 SOSIP gp120, HIV-1 Env AMC011 v4.2 SOSIP gp41, Monoclonal antibody VRC34.01 fragment antigen binding heavy chain, Monoclonal antibody VRC34.01 fragment antigen binding light chain |
| 5ACO | Q2N0S6 | Cryo-EM structure of PGT128 Fab in complex with BG505 SOSIP.664 Env trimer | HIV-1 ENVELOPE GLYCOPROTEIN, PGT128 FAB |
| 5ACO | 5ACO | Cryo-EM structure of PGT128 Fab in complex with BG505 SOSIP.664 Env trimer | HIV-1 ENVELOPE GLYCOPROTEIN, PGT128 FAB |
| 5FUU | Q75760 | Ectodomain of cleaved wild type JR-FL EnvdCT trimer in complex with PGT151 Fab | HIV-1 ENVELOPE GLYCOPROTEIN GP160, IMMUNOGLOBULIN G PGT151 |
| 5FUU | Q6BC19 | Ectodomain of cleaved wild type JR-FL EnvdCT trimer in complex with PGT151 Fab | HIV-1 ENVELOPE GLYCOPROTEIN GP160, IMMUNOGLOBULIN G PGT151 |
| 5FUU | 5FUU | Ectodomain of cleaved wild type JR-FL EnvdCT trimer in complex with PGT151 Fab | HIV-1 ENVELOPE GLYCOPROTEIN GP160, IMMUNOGLOBULIN G PGT151 |
| 3SE8 | 3SE8 | Crystal structure of broadly and potently neutralizing antibody VRC03 in complex with HIV-1 gp120 | HIV-1 Clade AE strain 93TH057 gp120, Heavy chain of antibody VRC03, Light chain of antibody VRC03 |
| 3SE9 | 3SE9 | Crystal structure of broadly and potently neutralizing antibody VRC-PG04 in complex with HIV-1 gp120 | HIV-1 Clade AE strain 93TH057 gp120, Heavy chain of antibody VRC-PG04, Light chain of antibody VRC-PG04 |
| 4RX4 | 4RX4 | Crystal structure of VH1-46 germline-derived CD4-binding site-directed antibody 8ANC134 in complex with HIV-1 clade A Q842.d12 gp120 | HIV-1 Clade A Q842.d12 gp120, 8ANC134 Heavy chain, 8ANC134 Light Chain |
| 4LSV | 4LSV | Crystal structure of broadly and potently neutralizing antibody 3BNC117 in complex with HIV-1 clade C C1086 gp120 | HIV-1 CLADE C STRAIN C1086 GP120 coreE, HEAVY CHAIN OF ANTIBODY 3BNC117, LIGHT CHAIN OF ANTIBODY 3BNC117 |
| 4LSU | 4LSU | Crystal structure of broadly and potently neutralizing antibody VRC-PG20 in complex with HIV-1 clade A/E 93TH057 gp120 | HIV-1 CLADE A/E STRAIN 93TH057 GP120, HEAVY CHAIN OF ANTIBODY VRC-PG20, LIGHT CHAIN OF ANTIBODY VRC-PG20 |
