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Glyco-enzyme reaction parameters estimated using Simulated Annealing via GlycoSim. The ranges of values for Km and Kmd that best matched experimental data are listed. The Parameter Estimation method has been described in this article.
| Enzyme | Gene ID | Uniprot ID | Substrate ID | BRENDA | Cazy family | Km_max | Km_min | Kmd_max | Kmd_min | taxonomyID | cell | Rhea | CHEBI |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| mannosyl-oligosaccharide 1,2-alpha-mannosidase | P45700 |
G34499SX
|
3.2.1.113 | GH47 |
|
|
|
|
10090 | ES cell | |||
| N-acetylgalactosaminide beta-1,3-galactosyltransferase | 94192 | Q9JJ06 |
G64973KT
|
2.4.1.122 | GT31 |
|
|
|
|
10090 | ES cell | ||
| Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 | 20447 | Q9WUV2 |
G63337SS
|
2.4.3.3 | GT29 |
|
|
|
|
10090 | ES cell | ||
| Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase | 14537 | Q09324 |
G57321FI
|
2.4.1.102 | GT14 |
|
|
|
|
10090 | ES cell | ||
| Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase | 14537 | Q09324 |
G19958IL
|
2.4.1.102 | GT14 |
|
|
|
|
10090 | ES cell | ||
| glycoprotein endo-alpha-1,2-mannosidase | 242362 | Q6NXH2 |
G60890ZT
|
3.2.1.130 | GH99 |
|
|
|
|
10090 | ES cell | ||
| polypeptide N-acetylgalactosaminyltransferase | 231050 | Q921L8 |
G08520NM
|
2.4.1.41 | GT27 |
|
|
|
|
10090 | ES cell | ||
| Beta-1,3-galactosyl-O-glycosyl-glycoprotein beta-1,6-N-acetylglucosaminyltransferase | 72077 | Q5JCT0 |
G00033MO
|
2.4.1.102 | GT14 |
|
|
|
|
10090 | ES cell | ||
| Alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase 1 | 26938 | Q9QYJ1 |
G60890ZT
|
2.4.3.3 | GT29 |
|
|
|
|
10090 | ES cell | ||
| polypeptide N-acetylgalactosaminyltransferase | 207839 | Q8C7U7 |
G11457RF
|
2.4.1.41 | GT27 |
|
|
|
|
10090 | ES cell |
