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Lumican

Summary
UniProt ID
P51885
Gene Symbol
  • Lcn
  • Ldc
  • Lum
Gene ID
17022
Organism
Mus musculus (house mouse)
GlycoProtDB
GPDB0003678
GlyGen
P51885
PubChem
P51885
Re-Glyco
P51885
Annotation
Keyword
  • Direct protein sequencing
  • Disulfide bond
  • Extracellular matrix
  • Leucine-rich repeat
  • Phosphoprotein
  • Proteoglycan
  • Pyrrolidone carboxylic acid
  • Reference proteome
  • Repeat
  • Signal
  • Sulfation
Gene Ontology (GO)
Displaying all 4 entries
GO Term
extracellular region
fibrillar collagen trimer
extracellular matrix
collagen-containing extracellular matrix
Subcellular Location(GO Annotation)

Subcellular in which this glycoprotein is expressed are highlighted in blue.

Displaying 1 entry
GO Term
collagen binding
Annotation information from UniProt.
Sequence
MNVCAFSLALALVGSVSGQYYDYDIPLFMYGQISPNCAPECNCPHSYPTAMYCDDLKLKSVPMVPPGIKYLYLRNNQIDHIDEKAFENVTDLQWLILDHNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLQDLQLTNNKISKLGSFDGLVNLTFIYLQHNQLKEDAVSASLKGLKSLEYLDLSFNQMSKLPAGLPTSLLTLYLDNNKISNIPDEYFKRFTGLQYLRLSHNELADSGVPGNSFNISSLLELDLSYNKLKSIPTVNENLENYYLEVNELEKFDVKSFCKILGPLSYSKIKHLRLDGNPLTQSSLPPDMYECLRVANEITVN
  • N : N-glycosylation Site
  • ___ : Potential Sequon
Glycosylation Sites
Displaying all 4 entries
Position Description PubMed ID GlyTouCan ID Source
88 N-linked (GlcNAc...) (keratan sulfate) asparagine
127 N-linked (GlcNAc...) (keratan sulfate) asparagine
160 N-linked (GlcNAc...) (keratan sulfate) asparagine
252 N-linked (GlcNAc...) (keratan sulfate) asparagine
Feature
501001502002503001338
50100150200250300MNVCAFSLALALVGSVSGQYYDYDIPLFMYGQISPNCAPECNCPHSYPTAMYCDDLKLKSVPMVPPGIKYLYLRNNQIDHIDEKAFENVTDLQWLILDHNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLQDLQLTNNKISKLGSFDGLVNLTFIYLQHNQLKEDAVSASLKGLKSLEYLDLSFNQMSKLPAGLPTSLLTLYLDNNKISNIPDEYFKRFTGLQYLRLSHNELADSGVPGNSFNISSLLELDLSYNKLKSIPTVNENLENYYLEVNELEKFDVKSFCKILGPLSYSKIKHLRLDGNPLTQSSLPPDMYECLRVANEITVN
Domains & sites
PTM
ProtVista
50100150200250300MNVCAFSLALALVGSVSGQYYDYDIPLFMYGQISPNCAPECNCPHSYPTAMYCDDLKLKSVPMVPPGIKYLYLRNNQIDHIDEKAFENVTDLQWLILDHNLLENSKIKGKVFSKLKQLKKLHINYNNLTESVGPLPKSLQDLQLTNNKISKLGSFDGLVNLTFIYLQHNQLKEDAVSASLKGLKSLEYLDLSFNQMSKLPAGLPTSLLTLYLDNNKISNIPDEYFKRFTGLQYLRLSHNELADSGVPGNSFNISSLLELDLSYNKLKSIPTVNENLENYYLEVNELEKFDVKSFCKILGPLSYSKIKHLRLDGNPLTQSSLPPDMYECLRVANEITVN
  • ProtVista GlyGen : Glycosylation Site from GlyGen
  • ProtVista UniProt : Glycosylation Site from UniProt
Pathway
Displaying all 3 entries
Pathway Name Organism
Integrin cell surface interactions Mus musculus
Keratan sulfate biosynthesis Mus musculus
Keratan sulfate degradation Mus musculus
Disease
Displaying 1 entry
DO ID Disease Name Source
DOID:14720 Ehlers-Danlos syndrome classic type 1
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International Collaboration

GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01

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Last updated: February 17, 2025