MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides
| Source | Last Updated |
|---|---|
| MatrixDB | May 10, 2022 |
| Molecule | Molecule Name | Molecule Species ▼ | Partner | Partner Name | Partner Species |
|---|---|---|---|---|---|
| P07214 | SPARC | Mus musculus | GAG_3 | Dermatan Sulfate | |
| P37237 | Fgf8 | Mus musculus | GAG_6 | Chondroitin Sulfate D | |
| O54943 | Per2 | Mus musculus | CAT_1 | Zinc | |
| MULT_1_mouse | Laminin-111 | Mus musculus | GAG_1 | Heparin | |
| MULT_1_mouse | Laminin-111 | Mus musculus | GAG_2 | Heparan sulfate | |
| MULT_1_mouse | Laminin-111 | Mus musculus | GAG_3 | Dermatan Sulfate | |
| MULT_2_mouse | Laminin-111_Nidogen-1 | Mus musculus | LIP_1 | Glycolipid Sulfatide | |
| MULT_4_VAR1_mouse | Collagen-IV v1 | Mus musculus | GAG_1 | Heparin | |
| PFRAG_1_mouse | Endostatin | Mus musculus | GAG_1 | Heparin | |
| PFRAG_1_mouse | Endostatin | Mus musculus | LIP_1 | Glycolipid Sulfatide | |
| PFRAG_3_mouse | NC1-XVIII | Mus musculus | GAG_1 | Heparin | |
| PFRAG_3_mouse | NC1-XVIII | Mus musculus | LIP_1 | Glycolipid Sulfatide | |
| PFRAG_6_mouse | Endorepellin | Mus musculus | GAG_1 | Heparin | |
| PFRAG_6_mouse | Endorepellin | Mus musculus | LIP_1 | Glycolipid Sulfatide | |
| Q91V88 | Npnt | Mus musculus | GAG_1 | Heparin | |
| Q91V88 | Npnt | Mus musculus | GAG_2 | Heparan sulfate | |
| P97484 | Lilrb3 | Mus musculus | PFRAG_12_human | Beta-amyloid peptide 1-42 | Homo sapiens |
| Q61234 | Snta1 | Mus musculus | PFRAG_100_mouse | Beta-dystroglycan | Mus musculus |
| Q61234 | Snta1 | Mus musculus | PFRAG_99_mouse | Alpha-dystroglycan | Mus musculus |
| Q4VBE4 | Egflam | Mus musculus | PFRAG_100_mouse | Beta-dystroglycan | Mus musculus |
| Q04207 | Rela | Mus musculus | PFRAG_63_mouse | Nuclear factor NF-kappa-B p50 subunit | Mus musculus |
| Q9WU78-1 | Pdcd6ip | Mus musculus | Q9WU78-1 | Pdcd6ip | Mus musculus |
| Q9WVI9-1 | Mapk8ip1 | Mus musculus | P12023-2 | APP | Mus musculus |
| Q9ES64-3 | Ush1c | Mus musculus | O75445-1 | Ush2a | Homo sapiens |
| P63277-1 | Amelx | Mus musculus | P63277-1 | Amelx | Mus musculus |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
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Last updated: December 8, 2025