MatrixDB is a freely available database focused on interactions established by extracellular matrix proteins, proteoglycans and polysaccharides
| Source | Last Updated |
|---|---|
| MatrixDB | May 10, 2022 |
| Molecule | Molecule Name | Molecule Species | Partner ▲ | Partner Name | Partner Species |
|---|---|---|---|---|---|
| P56199 | Itga1 | Homo sapiens | MULT_9_bovine | Collagen-II | Bos taurus |
| P56199 | Itga1 | Homo sapiens | MULT_9_chick | Collagen-II | Gallus gallus |
| P17301 | Itga2 | Homo sapiens | MULT_9_chick | Collagen-II | Gallus gallus |
| MULT_4_VAR1_mouse | Collagen-IV v1 | Mus musculus | MULT_9_mouse | Collagen-II | Mus musculus |
| Q96RS6-3 | NUDCD1 | Homo sapiens | O00165-5 | Hax1 | Homo sapiens |
| Q96JN8-2 | Neurl4 | Homo sapiens | O00213-2 | Apbb1 | Homo sapiens |
| O00257-3 | Cbx4 | Homo sapiens | O00257-1 | Cbx4 | Homo sapiens |
| Q8WXD2-1 | Scg3 | Homo sapiens | O00429-1 | Dnm1l | Homo sapiens |
| PFRAG_13_human | Beta-amyloid peptide 1-40 | Homo sapiens | O00468 | AGRN | Homo sapiens |
| Q96RS6-3 | NUDCD1 | Homo sapiens | O00468-6 | AGRN | Homo sapiens |
| Q96JN8-2 | Neurl4 | Homo sapiens | O00469-2 | Plod2 | Homo sapiens |
| P10636-7 | Mapt | Homo sapiens | O00499-1 | Bin1 | Homo sapiens |
| PFRAG_48_human | Major prion protein | Homo sapiens | O09131 | Gsto1 | Mus musculus |
| P15692-4 | Vegfa | Homo sapiens | O14786-2 | NRP1 | Homo sapiens |
| P46379-1 | Bag6 | Homo sapiens | O14931-1 | Ncr3 | Homo sapiens |
| O75521-2 | Eci2 | Homo sapiens | O15027-2 | Sec16a | Homo sapiens |
| MULT_15_human | Integrin-alpha5beta1 | Homo sapiens | O15232 | Matn3 | Homo sapiens |
| Q13557-8 | camk2d | Homo sapiens | O15357-2 | Inppl1 | Homo sapiens |
| Q92851-4 | CASP10 | Homo sapiens | O15519-1 | Cflar | Homo sapiens |
| O35235-1 | Tnfsf11 | Mus musculus | O35235-1 | Tnfsf11 | Mus musculus |
| O35464-1 | Sema6a | Mus musculus | O35464-1 | Sema6a | Mus musculus |
| PFRAG_95_mouse | CTF1-alpha | Mus musculus | O35609 | Scamp3 | Mus musculus |
| GAG_1 | Heparin | O35799 | Hfe | Rattus norvegicus | |
| Q92854-1 | Sema4d | Homo sapiens | O43157-1 | PLXNB1 | Homo sapiens |
| Q13557-8 | camk2d | Homo sapiens | O43164-2 | Pja2 | Homo sapiens |
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Supported by JST NBDC Grant Number JPMJND2204
Partly supported by NIH Common Fund Grant #1U01GM125267-01
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Last updated: December 8, 2025