GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	March 20, 2024
ECODAB	April 1, 2019

Displaying entries **226 - 250** of **263** in total

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Pathway Name ▼	Protein Name	UniProt ID	Gene Symbol	Organism	GlyTouCan ID
Collagen chain trimerization	Collagen alpha-1(XVII) chain Collagen type I alpha 1 chain Collagen type I alpha 2 chain Collagen type III alpha 1 chain Collagen type XII alpha 1 chain	A0A1D5PE57 A0A1D5PYU1 A0A1L1RPW4 A0A5H1ZRJ7 Q90584	BP180 BPAG2 COL12A1 COL17A1 COL1A1 COL1A2 COL3A1	Gallus gallus (chicken)
Collagen biosynthesis and modifying enzymes	ADAM metallopeptidase with thrombospondin type 1 motif 3 Collagen alpha-1(XVII) chain Collagen alpha-2(VI) chain Collagen type I alpha 1 chain Collagen type I alpha 2 chain Collagen type III alpha 1 chain Collagen type IV alpha 1 chain Collagen type XII alpha 1 chain Prolyl 3-hydroxylase 2 Serpin H1	A0A1D5P8P3 A0A1D5PE57 A0A1D5PYU1 A0A1L1RPW4 A0A5H1ZRJ7 F1NVD1 P13731 P15988 Q6JHU7 Q90584	ADAMTS3 BP180 BPAG2 COL12A1 COL17A1 COL1A1 COL1A2 COL3A1 COL4A1 COL6A2 HSP47 LEPREL1 P3H2 SERPINH1	Gallus gallus (chicken)
Clathrin-mediated endocytosis	AP-2 complex subunit alpha AP-2 complex subunit mu Actin-related protein 2/3 complex subunit 3 Actin-related protein 2/3 complex subunit 5 Actin-related protein 2/3 complex subunit Actin-related protein 2 Actin-related protein 3 Amphiregulin ArfGAP with FG repeats 1 Betacellulin Bridging integrator 1 Clathrin light chain Clathrin light chain Endophilin-A1 Epigen Epiregulin Epsin 2 GTPase activating protein and VPS9 domains 1 Growth factor receptor-bound protein 2 Heat shock 70kDa protein 8 Interleukin-7 receptor subunit alpha Mannose-6-phosphate receptor, cation dependent NECAP endocytosis associated 2 Phosphatidylinositol-4-phosphate 3-kinase catalytic subunit type 2 alpha Phosphatidylinositol-4-phosphate 5-kinase, type I, gamma Polyubiquitin-B Proheparin-binding EGF-like growth factor Protein kinase C and casein kinase substrate in neurons 2 Protein kinase C and casein kinase substrate in neurons 3 Ras-related protein Rab-5B Ras-related protein Rab-5C Receptor protein-tyrosine kinase SH3 domain containing GRB2 like 3, endophilin A3 SH3 domain-containing protein Scavenger receptor class B member 2 Solute carrier family 2 member 8 Sorting nexin Sorting nexin Synaptotagmin-1 Ubiquitin B Ubiquitin-ribosomal protein eS31 fusion protein Vesicle-associated membrane protein 3 Vesicle-associated membrane protein 7 Wiskott-Aldrich syndrome like small monomeric GTPase	A0A1D5NV94 A0A1D5P546 A0A1D5P882 A0A1D5PFJ6 A0A1D5PKH0 A0A1D5PL88 A0A1L1RMY8 A0A3Q2TVQ8 A0A3Q2TZM7 A0A3Q2U5N2 A0A3Q2UI02 A1EA95 A3R0S3 E1BRR6 E1BTH9 E1BTY4 E1C007 E1C1G0 E1C4N7 E1C8Y3 F1NB17 F1ND21 F1NDA6 F1NJR9 F1NN78 F1NZ04 F1P4I3 P0CG62 P47191 P53488 P79781 Q5EG71 Q5ZHW4 Q5ZIP7 Q5ZJI7 Q5ZL74 Q5ZMP6 Q5ZMQ7 Q5ZMV5 Q645M5 Q64EU6 Q8AXV1 Q90WD0 Q98932 Q9W7C5	ACTR2 ACTR3 AGFG1 AP2A2 AP2M1 AREG ARP2 ARP3 ARPC1A ARPC3 ARPC5 BIN1 BTC CLTA CLTB EGFR EPGN EPN2 EREG GAPVD1 GRB2 HBEGF HEGFL HSPA8 IL7R M6PR NECAP2 PACSIN2 PACSIN3 PIK3C2A PIP5K1C RAB5A RAB5B RAB5C RCJMB04_1g20 RPS27A SCARB2 SH3GL2 SH3GL3 SH3P4 SLC2A8 SNX18 SNX9 SYBL1 SYT1 UBA80 UBB VAMP3 VAMP7 WASL	Gallus gallus (chicken)
Class A/1 (Rhodopsin-like receptors)	Chemerin-like receptor 1 G protein-coupled receptor 55 G protein-coupled receptor 65 G-protein coupled receptor 39 G-protein coupled receptors family 1 profile domain-containing protein Melatonin receptor 1B Melatonin receptor type 1A N-arachidonyl glycine receptor Platelet-activating factor receptor Succinate receptor 1	A0A0A0MQ60 A0A1D5P7P2 A0A3Q2U480 A1XWZ9 E1C095 F1NA96 F1NJ83 F1NRF0 P49285 R4GHJ0	CMKLR1 GPR132 GPR18 GPR39 GPR55 GPR65 MTNR1B PTAFR SUCNR1	Gallus gallus (chicken)
Chromatin modifying enzymes	Histone H3.2 Protein-arginine deiminase protein-arginine deiminase	E1C0W6 P84229 S6BNL5	H3-I H3-II H3-III H3-IV H3-V H3-VI H3-VII H3-VIII PADI1 PADI2 cPAD1 cPAD2	Gallus gallus (chicken)
Cellular hexose transport	Solute carrier family 2 member 11 Solute carrier family 2 member 5 Solute carrier family 2 member 8 Solute carrier family 2, facilitated glucose transporter member 12 Solute carrier family 2, facilitated glucose transporter member 3	E1C4E5 F1NDA6 F1NTJ1 F1NVV4 F1P4J7	SLC2A11 SLC2A12 SLC2A14 SLC2A5 SLC2A8	Gallus gallus (chicken)	G58161NS G70323CJ
Cell surface interactions at the vascular wall	CD48 CXADR Ig-like cell adhesion molecule Integrin subunit alpha 4 Invariant chain isoform p41 Joining chain of multimeric IgA and IgM Leukocyte surface antigen CD47 Macrophage migration inhibitory factor Uncharacterized protein	A0A1D5PIR0 A0A1D5PKL9 E1BY93 F1NSL7 K4L906 Q02960 Q6J613 Q6XFR1	CD47 CD48 ITGA4 Ii JCHAIN MIF TSTD1	Gallus gallus (chicken)
Cargo recognition for clathrin-mediated endocytosis	AP-2 complex subunit alpha AP-2 complex subunit mu Amphiregulin ArfGAP with FG repeats 1 Betacellulin COP9 signalosome complex subunit 2 COP9 signalosome complex subunit 3 COP9 signalosome complex subunit 4 COP9 signalosome complex subunit 8 COP9 signalosome subunit 7A Clathrin light chain Endophilin-A1 Epigen Epiregulin Epsin 2 Growth factor receptor-bound protein 2 Interleukin-7 receptor subunit alpha Mannose-6-phosphate receptor, cation dependent Polyubiquitin-B Proheparin-binding EGF-like growth factor Receptor protein-tyrosine kinase SH3 domain containing GRB2 like 3, endophilin A3 SH3 domain-containing protein Scavenger receptor class B member 2 Solute carrier family 2 member 8 Synaptotagmin-1 Torsin family 1 member B Ubiquitin B Ubiquitin-ribosomal protein eS31 fusion protein Vesicle-associated membrane protein 3 Vesicle-associated membrane protein 7	A0A1D5NV94 A0A1D5P546 A0A1D5P6D2 A0A1D5P882 A0A1D5PKH0 A0A1L1RMY8 A0A1L1RTK2 A0A3Q2U5N2 A0A3Q2UI02 A1EA95 A3R0S3 E1BRR6 E1C3U6 F1NB17 F1NDA6 F1NJR9 F1P4I3 P0CG62 P47191 P79781 Q5EG71 Q5ZJA1 Q5ZJF1 Q5ZJV0 Q5ZL74 Q5ZMP6 Q5ZMQ7 Q645M5 Q64EU6 Q8AXV1 Q9W7C5	AGFG1 AP2A2 AP2M1 AREG BTC CLTA COPS2 COPS3 COPS7A COPS8 CSN3 EGFR EPGN EPN2 EREG GRB2 HBEGF HEGFL IL7R M6PR RCJMB04_15i11 RCJMB04_1g20 RPS27A SCARB2 SH3GL2 SH3GL3 SH3P4 SLC2A8 SYBL1 SYT1 TOR1B UBA80 UBB VAMP3 VAMP7	Gallus gallus (chicken)
Ca2+ pathway	1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase Catenin beta-1 Frizzled class receptor 3 Frizzled-4 G protein subunit alpha transducin 2 G protein subunit beta 3 G protein subunit beta 4 G protein subunit gamma 13 Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-1 Guanine nucleotide-binding protein G(o) subunit alpha Guanine nucleotide-binding protein subunit gamma Guanine nucleotide-binding protein subunit gamma Guanine nucleotide-binding protein subunit gamma Guanine nucleotide-binding protein subunit gamma Guanine nucleotide-binding protein subunit gamma Lymphoid enhancer binding factor 1 Phosphodiesterase Protein Wnt-11 Protein Wnt Protein phospatase 3 regulatory subunit B alpha isoform type 1 Rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma calcium/calmodulin-dependent protein kinase small monomeric GTPase	A0A1D5NTJ0 A0A1D5NYE8 A0A1D5NZL7 A0A1D5P7Z5 A0A1D5PLZ8 A0A1D5PT95 A0A1D5PZ45 A0A3Q2UEZ9 A0A3Q3B1W2 E1BW98 E1C1U6 E1C795 F1NA42 F1NGS8 F1NLV4 P49339 Q5ZJ03 Q6VN51 Q802E4 Q9IA05 Q9YGX6 R4GFT9 R4GKD1	CAMK2A CTNNB1 FZ4 FZD3 FZD4 GNAO1 GNAT2 GNB1 GNB3 GNB4 GNG10 GNG12 GNG13 GNG2 GNG5 GNGT2 KRAS LEF1 OXLD1 PDE6B PDE6b PLCB1 RCJMB04_23k16 WNT-11 WNT11 WNT5A	Gallus gallus (chicken)
CS/DS degradation	Alpha-L-iduronidase Beta-hexosaminidase Decorin	A0A1L1RX77 F1NTQ2 Q5F366	DCN HEXB RCJMB04_31l23	Gallus gallus (chicken)	G27025MB
Butyrophilin (BTN) family interactions	Hepatic lectin	P02707		Gallus gallus (chicken)
Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein	Mannosyltransferase N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase UDP-N-acetylglucosamine--dolichyl-phosphate N-acetylglucosaminephosphotransferase	A0A1D5PQ50 A0A1L1RT72 F1P077	ALG12 DPAGT1	Gallus gallus (chicken)
Biosynthesis of electrophilic ω-3 PUFA oxo-derivatives	Prostaglandin G/H synthase 2	P27607	CEF-147 PTGS2	Gallus gallus (chicken)
Biosynthesis of EPA-derived SPMs	Prostaglandin G/H synthase 2	P27607	CEF-147 PTGS2	Gallus gallus (chicken)
Biosynthesis of DPAn-3 SPMs	Prostaglandin G/H synthase 2	P27607	CEF-147 PTGS2	Gallus gallus (chicken)
Biosynthesis of DHA-derived SPMs	Prostaglandin G/H synthase 2	P27607	CEF-147 PTGS2	Gallus gallus (chicken)
Basigin interactions	Basigin Caveolin Integrin alpha-6 Monocarboxylate transporter 1 Sodium/potassium-transporting ATPase subunit beta-3 interstitial collagenase	A0M8T8 E1C9D9 P17790 P26007 P33879 Q5ZLZ6	ATP1B3 BSG CAV1 ITGA6 MMP1 RCJMB04_4e8	Gallus gallus (chicken)
B-WICH complex positively regulates rRNA expression	Actin, cytoplasmic 1 DEK proto-onco DNA-directed RNA polymerase II subunit E DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Histone H2A-IV Histone H2A.J Histone H2A.V Histone H2A Histone H2A Histone H2A Histone H2B 1/2/3/4/6 Histone H2B 5 Histone H2B 7 Histone H2B 8 Histone H2B Histone H2B Histone H3.2 Histone H3.3 Histone H4 Splicing factor 3b subunit 1 TATA box-binding protein-associated factor RNA polymerase I subunit B TATA-box-binding protein	A0A1D5PW04 A0A1D5PY49 A0A1L1RNY8 A0A3Q2UDI2 E1BSY6 E1C2C3 F1NDD7 F1NHV9 F1P5G5 P02263 P02272 P0C1H3 P0C1H4 P0C1H5 P60706 P62801 P70082 P84229 P84247 Q5F422 Q5ZJR9 Q6JLB1 Q9PSW9 Q9PT88	ACTB DEK H2A-IX H2AF H2AFX H2AZ2 H2B-I H2B-II H2B-III H2B-IV H2B-V H2B-VI H2B-VII H2B-VIII H3-I H3-II H3-III H3-IV H3-IX H3-V H3-VI H3-VII H3-VIII H3-X H4-I H4-II H4-III H4-IV H4-V H4-VI H4-VII HIST1H2B5L LOC100859381 LOC426037 POLR1B POLR2E POLR2L RPB6 SF3B1 TAF1B TBP	Gallus gallus (chicken)
Axonal growth stimulation	GTP-binding protein Rho GDP-dissociation inhibitor 1 Tumor necrosis factor receptor superfamily member 16	F1P3P3 O93467 P18519	ARHGDIA NGFR RHOA TNFRSF16 cRhoA rhoA	Gallus gallus (chicken)
Assembly of the pre-replicative complex	26S proteasome non-ATPase regulatory subunit 13 26S proteasome non-ATPase regulatory subunit 2 26S proteasome regulatory subunit 7 AAA+ ATPase domain-containing protein Anaphase-promoting complex subunit CDC26 Cell division cycle protein 27 homolog DNA replication licensing factor MCM3 DNA replication licensing factor MCM4 DNA replication licensing factor MCM5 DNA replication licensing factor MCM6 Fizzy/cell division cycle 20 related 1 Polyubiquitin-B Proteasome 26S subunit, non-ATPase 12 Proteasome 26S subunit, non-ATPase 14 Proteasome 26S subunit, non-ATPase 7 Proteasome activator complex subunit 3 Proteasome inhibitor PI31 subunit Proteasome subunit alpha type Proteasome subunit alpha type Proteasome subunit alpha type Proteasome subunit alpha type Proteasome subunit alpha type Proteasome subunit beta Proteasome subunit beta Proteasome subunit beta Ubiquitin B Ubiquitin-conjugating enzyme E2 C Ubiquitin-ribosomal protein eS31 fusion protein	A0A1D5P546 A0A1D5PJW4 A0A3Q2UD09 E1BX02 E1C2U4 E1C6N0 F1NC02 F1NEQ6 F1NFJ0 F1NPQ0 F1NR71 H9L1Y1 P0CG62 P79781 P84169 Q5F3J5 Q5ZIT7 Q5ZJL3 Q5ZJX9 Q5ZK91 Q5ZKL0 Q5ZKR8 Q5ZLI2 Q5ZMB8 Q6JLB2 Q7ZT63 R4GJY8 R4GLB3	CDC26 FZR1 MCM3 MCM4 MCM5 PSMA3 PSMA4 PSMA6 PSMA7 PSMB1 PSMB2 PSMB7 PSMC2 PSMD12 PSMD13 PSMD14 PSMD2 PSMD7 PSME3 PSMF1 RCJMB04_12e16 RCJMB04_14i9 RCJMB04_23k2 RCJMB04_9i8 RPS27A UBA80 UBB UBE2U cpsmb7	Gallus gallus (chicken)
Assembly of the ORC complex at the origin of replication	Histone H2A-IV Histone H2A.J Histone H2A.V Histone H2A Histone H2A Histone H2A Histone H2B 1/2/3/4/6 Histone H2B 5 Histone H2B 7 Histone H2B 8 Histone H2B Histone H2B Histone H3.2 Histone H3.3 Histone H4 Importin subunit alpha Karyopherin subunit beta 1	A0A1D5P1W7 A0A1D5PY49 A0A1L1RNY8 A0A3Q2UDI2 F1NDD7 F1P5G5 F7B5S0 P02263 P02272 P0C1H3 P0C1H4 P0C1H5 P62801 P70082 P84229 P84247 Q9PSW9	H2A-IX H2AF H2AFX H2AZ2 H2B-I H2B-II H2B-III H2B-IV H2B-V H2B-VI H2B-VII H2B-VIII H3-I H3-II H3-III H3-IV H3-IX H3-V H3-VI H3-VII H3-VIII H3-X H4-I H4-II H4-III H4-IV H4-V H4-VI H4-VII HIST1H2B5L KPNA6 KPNB1 LOC100859381 LOC426037	Gallus gallus (chicken)
Assembly of active LPL and LIPC lipase complexes	Lipoprotein lipase Uncharacterized protein furin	A0A1L1RJC1 P11602 Q91000	FURIN LOC101747868 LPL	Gallus gallus (chicken)
Aspirin ADME	ABC-type glutathione-S-conjugate transporter Albumin Basigin Cytochrome P450 CYP2D49 Monocarboxylate transporter 1	A0A1D5NW68 F1NJG4 F1NM51 P17790 Q5ZLZ6	ABCC3 ALB BSG CYP2D6 RCJMB04_4e8	Gallus gallus (chicken)
Asparagine N-linked glycosylation	Hepatic lectin	P02707		Gallus gallus (chicken)
Arachidonic acid metabolism	Cytosolic phospholipase A2	P49147	CPLA2 PLA2G4 PLA2G4A	Gallus gallus (chicken)

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