GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 101 - 125 of 263 in total
Pathway Name ▼ Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
Norepinephrine Neurotransmitter Release Cycle
  • CPLX1
  • SNAP
  • SNAP25
  • STXBP1
  • SYT1
  • UNC13B
Gallus gallus (chicken)
Nonhomologous End-Joining (NHEJ)
  • BABAM2
  • BRE
  • DCLRE1C
  • H2AFX
  • H2B-I
  • H2B-II
  • H2B-III
  • H2B-IV
  • H2B-V
  • H2B-VI
  • H2B-VII
  • H2B-VIII
  • H4-I
  • H4-II
  • H4-III
  • H4-IV
  • H4-V
  • H4-VI
  • H4-VII
  • HIST1H2B5L
  • LOC100859381
  • LOC426037
  • NHEJ1
  • PIAS4
  • SNM1C
  • TDP2
  • XRCC4
Gallus gallus (chicken)
Nicotinate metabolism
  • BST1
  • CD38
  • NADK
  • NMNAT1
  • NMNAT2
Gallus gallus (chicken)
Nicotinamide salvaging
  • CEF-147
  • NAMPTP1
  • NUDT12
  • PBEF1
  • PTGS2
  • SLC5A8
Gallus gallus (chicken)
Neutrophil degranulation
  • ACLY
  • ACTR10
  • ACTR2
  • AGA
  • ALDOC
  • AMPD3
  • ANG
  • ANPEP
  • ANX2
  • ANXA2
  • AP1M1
  • AP2A2
  • APDE
  • APG7L
  • ARL8A
  • ARMC8
  • ARP2
  • ARPC5
  • ASAH1
  • ATG7
  • ATP6V0A1
  • ATP6V0C
  • ATP8A1
  • B-FIV
  • B2M
  • BF1
  • BF2
  • BFIV21
  • BST1
  • C1R
  • C1orf35
  • C6orf120
  • CAB39
  • CAND1
  • CAP1
  • CATH
  • CATHB1
  • CATHL1
  • CATHL2
  • CATHL3
  • CCT2
  • CD300LG
  • CD47
  • CEF4
  • CHRNB4
  • CL2
  • CMAP27
  • CMTM6
  • CNN2
  • COMMD3
  • COPB
  • COPB1
  • COTL1
  • CPPED1
  • CREG1
  • CRISP2
  • CST3
  • CSTB
  • CTSD
  • CXCL8
  • CXCR1
  • CYFIP1
  • CYSTM1
  • DEGS1
  • DES1
  • DNAJC3
  • DNCLI1
  • DYNC1H1
  • DYNC1LI1
  • Dsn1/Q9H410
  • EEF1A
  • EEF2
  • EMF1
  • FABP5
  • FTH
  • FUCA2
  • GALNS
  • GNS
  • GPI
  • GUSB
  • GYG1
  • HBB
  • HBE1
  • HEXB
  • HMG1
  • HMGB1
  • HSPA8
  • IL8
  • IMPDH
  • IMPDH2
  • IQGAP3
  • JUP
  • KPNB1
  • KRABZFP
  • LAMP1
  • LGALS3
  • LOC107054567
  • LOC121107389
  • LOC431003
  • LYZ
  • MAPK14
  • MIF
  • MME
  • MMP1
  • NDUFC2
  • NFAM1
  • NFKB1
  • NRAMP1
  • NRAS
  • OGCHI
  • ORM1
  • ORMDL3
  • P2RX1
  • P2X1
  • PA2G4
  • PADI2
  • PFKL
  • PGAM1
  • PGM1
  • PGRMC1
  • PKM
  • PLD1
  • PRCP
  • PRDX4
  • PRKCD
  • PSEN1
  • PSMB1
  • PSMB7
  • PSMC2
  • PSMD12
  • PSMD13
  • PSMD14
  • PSMD2
  • PSMD7
  • PTAFR
  • PYGB
  • QSCN6
  • QSOX
  • QSOX1
  • RAB14
  • RAB18
  • RAB31
  • RAB5B
  • RAB5C
  • RAB6A
  • RAB7A
  • RAP1A
  • RAP1B
  • RCJMB04_11h1
  • RCJMB04_14i9
  • RCJMB04_16g14
  • RCJMB04_23k2
  • RCJMB04_2a4
  • RCJMB04_35e13
  • RCJMB04_9e23
  • RHOA
  • RHOG
  • Rab27a
  • S100A10
  • S100A11
  • SERPINB14
  • SLC11A1
  • SLC2A14
  • SLC2A5
  • SLCO4C1
  • SNAP
  • SNAP23
  • SNAP25
  • SNAP29
  • SOX
  • SRP14
  • STBD1
  • STING
  • STING1
  • STK10
  • STOM
  • SURF4
  • SVIP
  • TIMP2
  • TMEM173
  • TMEM30A
  • TMEM63A
  • TNFAIP6
  • TNFIP6
  • TNFRSF1B
  • TOM1
  • TSPAN14
  • TTR
  • VCL
  • VCP
  • VINC1
  • YPEL5
  • YRK
  • cPAD2
  • cRac1A
  • cRhoA
  • cpsmb7
  • k60
  • ogchi
  • rhoA
  • vcp
Gallus gallus (chicken)
Neurotransmitter release cycle
  • NAAA
Gallus gallus (chicken)
Neurotransmitter receptors and postsynaptic signal transmission
  • GLRB
Gallus gallus (chicken)
Negative regulation of the PI3K/AKT network
  • AKT1
  • PHLPP1
  • THEM4
Gallus gallus (chicken)
Negative regulation of FGFR3 signaling
  • CEK2
  • FGF-18
  • FGF1
  • FGF18
  • FGF2
  • FGF23
  • FGF4
  • FGF8
  • FGFR3
  • FRS2
  • Fgf16
  • GRB2
  • PTPN11
  • RPS27A
  • UBA80
  • UBB
Gallus gallus (chicken)
Negative regulation of FGFR2 signaling
  • CEK3
  • FGF-18
  • FGF-3
  • FGF1
  • FGF10
  • FGF18
  • FGF2
  • FGF23
  • FGF3
  • FGF4
  • FGF6
  • FGF7
  • FGF8
  • FGFR2
  • FRS2
  • Fgf16
  • Fgf7
  • GRB2
  • PTPN11
  • RPS27A
  • UBA80
  • UBB
Gallus gallus (chicken)
Negative regulation of FGFR1 signaling
  • CEK1
  • FGF-3
  • FGF1
  • FGF10
  • FGF2
  • FGF23
  • FGF3
  • FGF4
  • FGF6
  • FGF8
  • FGFR1
  • FRS2
  • GRB2
  • PTPN11
  • RPS27A
  • UBA80
  • UBB
Gallus gallus (chicken)
NTRK2 activates RAC1
  • BDNF
  • FYN
  • NTRK2
  • TRKB
  • cRac1A
Gallus gallus (chicken)
NTF3 activates NTRK3 signaling
  • NTF3
  • NTRK3
  • TRKC
Gallus gallus (chicken)
NRIF signals cell death from the nucleus
  • NGFR
  • PSEN1
  • PSEN2
  • RPS27A
  • SQSTM1
  • TNFRSF16
  • TRAF6
  • UBA80
  • UBB
Gallus gallus (chicken)
NFkB and MAPK activation mediated by TRAF6
  • H2
  • LY96
  • MYD88
  • RCJMB04_15c17
  • RCJMB04_17b10
  • RCJMB04_29d24
  • RPS27A
  • TIRAP
  • TLR1
  • TLR15
  • TLR1Lb
  • TLR2-1
  • TLR4
  • TLR5
  • TRAF6
  • UBA52
  • UBA80
  • UBB
  • UBCEP2
  • flaF
  • fliC
  • fljB
  • hag
Gallus gallus (chicken)
NFG and proNGF binds to p75NTR
  • NGFR
  • TNFRSF16
Gallus gallus (chicken)
NF-kB is activated and signals survival
  • NFKB1
  • NGFR
  • RPS27A
  • SQSTM1
  • TNFRSF16
  • TRAF6
  • UBA80
  • UBB
Gallus gallus (chicken)
N-glycan trimming in the ER and Calnexin/Calreticulin cycle
  • AMFR
  • RPS27A
  • UBA80
  • UBB
  • VCP
  • vcp
Gallus gallus (chicken)
N-glycan trimming and elongation in the cis-Golgi
Gallus gallus (chicken)
N-Glycan antennae elongation
  • B4GALT2
  • B4GALT6
  • LOC427873
  • MGAT4A
  • MGAT5
  • SIAT8C
  • ST8SIA6
Gallus gallus (chicken)
Myogenesis
  • BNIP2
  • CDC42
  • CDH2
  • CTNNB1
  • MAPK12
  • MAPK14
  • MEF2D
  • MRF4
  • MYF5
  • MYF6
  • MYOD1
  • MYOG
Gallus gallus (chicken)
MyD88:TIRAP-dependent cascade initiated on plasma membrane
  • LY96
  • MYD88
  • RCJMB04_17b10
  • RCJMB04_29d24
  • TIRAP
  • TLR1
  • TLR1Lb
  • TLR2-1
  • TLR4
Gallus gallus (chicken)
MyD88 cascade initiated on plasma membrane
  • H2
  • MYD88
  • RCJMB04_17b10
  • RCJMB04_29d24
  • TLR15
  • TLR5
  • flaF
  • fliC
  • fljB
  • hag
Gallus gallus (chicken)
Muscarinic acetylcholine receptors
  • CHRM2
  • CHRM5
  • CM2
Gallus gallus (chicken)
Miscellaneous transport and binding events
  • ANKH
  • LOC107056693
  • LRRC8A
  • LRRC8C
  • LRRC8D
  • NIPA2
  • NIPAL3
  • PQLC2
  • SLC66A1
Gallus gallus (chicken)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024