GlyCosmos Portal

GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source	Last Updated
Reactome	March 20, 2024
ECODAB	April 1, 2019

Displaying entries **101 - 125** of **263** in total

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Pathway Name	Protein Name ▲	UniProt ID	Gene Symbol	Organism	GlyTouCan ID
Ion transport by P-type ATPases	Calcium-transporting ATPase Calcium-transporting ATPase Cardiac phospholamban FXYD domain-containing ion transport regulator PDZ domain-containing protein 11 Phospholipid-transporting ATPase Phospholipid-transporting ATPase Phospholipid-transporting ATPase Phospholipid-transporting ATPase Phospholipid-transporting ATPase Plasma membrane calcium-transporting ATPase 1 Sodium/potassium-transporting ATPase subunit alpha Sodium/potassium-transporting ATPase subunit beta-3 Sodium/potassium-transporting ATPase subunit beta calcium/calmodulin-dependent protein kinase	A0A1D5P8E2 A0A1L1RKB7 A0A3Q2U0I3 A0A3Q2U2N5 E1BX05 F1NGS8 F1NUR8 F1NZB7 F1P2K5 P33879 Q07420 Q5ZIK2 Q5ZM59 Q98SH2 R4GK80	ATP10B ATP12A ATP1B3 ATP2A2 ATP2B1 ATP2B2 ATP4B ATP8A1 ATP8A2 ATP9A ATP9B CAMK2A PDZD11 PDZK11 PLN PMCA1 RCJMB04_3a16	Gallus gallus (chicken)
Other interleukin signaling	Caspase-3 Interferon lambda receptor 1 Interferon lambda-3 Interleukin 34 Myelomonocytic growth factor Synaptosomal-associated protein 25 Syndecan Taxilin alpha Tyrosine-protein kinase	A0A3Q3B2W9 B4ER10 F1NMJ9 F1NV24 K9JA28 O93417 P13854 P60878 R4GIU3	CASP3 IFNL IFNL3 IFNLR1 IL28 IL28B IL28RA IL34 JAK1 SDC1 SNAP SNAP25 TXLNA	Gallus gallus (chicken)
Metabolism of Angiotensinogen to Angiotensins	Cathepsin D Neprilysin	Q05744 Q67BJ2	CTSD MME	Gallus gallus (chicken)
RUNX1 regulates transcription of genes involved in differentiation of keratinocytes	Cathepsin V Ovalbumin	F1NYJ1 P01012	CTSV SERPINB14	Gallus gallus (chicken)
RHO GTPases activate PAKs	Cell division control protein 42 homolog LIM domain kinase 1 Myosin light chain 12B Myosin regulatory light chain 2, smooth muscle major isoform Myosin regulatory light chain 2, smooth muscle minor isoform Myosin-9 Protein phosphatase 1 regulatory subunit 12A Ras-related C3 botulinum toxin substrate 1 Serine/threonine-protein kinase PAK 3 Serine/threonine-protein phosphatase PP1-beta catalytic subunit Uncharacterized protein non-specific serine/threonine protein kinase non-specific serine/threonine protein kinase	A0A1D5PM19 A0A1L1RUU9 E1BS97 E1C3P6 F1N8W8 P02612 P24032 P62207 Q5ZJB0 Q6LC82 Q8QFP8 Q90623 Q90694	CDC42 LIMK1 MBS MYH9 MYL12B MYPT1 PAK1 PAK2 PAK3 PPP1CB PPP1R12A RCJMB04_19i21 cRac1A	Gallus gallus (chicken)
Deposition of new CENPA-containing nucleosomes at the centromere	Centromere protein H Centromere protein I Centromere protein L Centromere protein M Centromere protein N Centromere protein O Centromere protein S Centromere protein T Centromere protein W Histone H2A-IV Histone H2A.J Histone H2A.V Histone H2A Histone H2A Histone H2A Histone H2B 1/2/3/4/6 Histone H2B 5 Histone H2B 7 Histone H2B 8 Histone H2B Histone H2B Histone H4 Opa interacting protein 5 Protein Mis18-alpha RB binding protein 4, chromatin remodeling factor RuvB-like helicase	A0A1D5PY49 A0A1L1RNY8 A0A3Q2UDI2 E1BQA1 E1BQA3 E1BSW7 F1N8S4 F1N8Z4 F1NDD7 F1NPG5 F1P5G5 F2Z4M0 P02263 P02272 P0C1H3 P0C1H4 P0C1H5 P0DJH6 P62801 P70082 Q1T765 Q1T7B9 Q1T7C0 Q8AYS7 Q90ZF9 Q9PSW9	APITD1 CENPH CENPI CENPL CENPM CENPN CENPO CENPS CENPT CENPW H2A-IX H2AF H2AFX H2AZ2 H2B-I H2B-II H2B-III H2B-IV H2B-V H2B-VI H2B-VII H2B-VIII H4-I H4-II H4-III H4-IV H4-V H4-VI H4-VII HIST1H2B5L LOC100859381 LOC426037 MIS18A OIP5 RBBP4 RUVBL1	Gallus gallus (chicken)
Class A/1 (Rhodopsin-like receptors)	Chemerin-like receptor 1 G protein-coupled receptor 55 G protein-coupled receptor 65 G-protein coupled receptor 39 G-protein coupled receptors family 1 profile domain-containing protein Melatonin receptor 1B Melatonin receptor type 1A N-arachidonyl glycine receptor Platelet-activating factor receptor Succinate receptor 1	A0A0A0MQ60 A0A1D5P7P2 A0A3Q2U480 A1XWZ9 E1C095 F1NA96 F1NJ83 F1NRF0 P49285 R4GHJ0	CMKLR1 GPR132 GPR18 GPR39 GPR55 GPR65 MTNR1B PTAFR SUCNR1	Gallus gallus (chicken)
Acetylcholine Neurotransmitter Release Cycle	Choline O-acetyltransferase Complexin-1 Solute carrier family 5 member 7 Synaptosomal-associated protein 25 Synaptotagmin-1 Syntaxin-binding protein 1 Unc-13 homolog B	A0A1D5PHU2 E1C8G7 F1NY18 F1P393 F1P4Q0 P47191 P60878	CHAT CPLX1 SLC5A7 SNAP SNAP25 STXBP1 SYT1 UNC13B	Gallus gallus (chicken)
Transport of bile salts and organic acids, metal ions and amine compounds	Choline transporter-like protein Solute carrier family 5 member 7	A0A3Q3AVJ7 F1P4Q0	SLC44A5 SLC5A7	Gallus gallus (chicken)
Common Pathway of Fibrin Clot Formation	Coagulation factor X Coagulation factor XIII A chain Endothelial protein C receptor Serpin family D member 1 Serpin family E member 2	A0A1D5PLZ2 E1BWG1 E1BWU2 P25155 Q4ADW2	F10 F13A1 FX PROCR SERPIND1 SERPINE2	Gallus gallus (chicken)
Intrinsic Pathway of Fibrin Clot Formation	Coagulation factor X Glycoprotein IX platelet Glycoprotein Ib platelet subunit beta Prolylcarboxypeptidase Serpin family D member 1 Serpin family E member 2 Tsukushi	A0A1D5PLZ2 A0A1D5PVG8 A0A3Q3AXX7 E1BWU2 F1P1G3 P25155 Q65Z91	F10 FX GP1BB GP9 LRRC54 PRCP SERPIND1 SERPINE2 TSK TSKU	Gallus gallus (chicken)
Removal of aminoterminal propeptides from gamma-carboxylated proteins	Coagulation factor X Osteocalcin furin	A0A1D5PRL0 P25155 Q91000	BGLAP F10 FURIN FX	Gallus gallus (chicken)
Transport of gamma-carboxylated protein precursors from the endoplasmic reticulum to the Golgi apparatus	Coagulation factor X Osteocalcin	A0A1D5PRL0 P25155	BGLAP F10 FX	Gallus gallus (chicken)
Extrinsic Pathway of Fibrin Clot Formation	Coagulation factor X	P25155	F10 FX	Gallus gallus (chicken)
Collagen chain trimerization	Collagen alpha-1(XVII) chain Collagen type I alpha 1 chain Collagen type I alpha 2 chain Collagen type III alpha 1 chain Collagen type XII alpha 1 chain	A0A1D5PE57 A0A1D5PYU1 A0A1L1RPW4 A0A5H1ZRJ7 Q90584	BP180 BPAG2 COL12A1 COL17A1 COL1A1 COL1A2 COL3A1	Gallus gallus (chicken)
Signaling by PDGF	Collagen type IV alpha 1 chain Plasminogen activator Plasminogen Platelet-derived growth factor C Platelet-derived growth factor D Platelet-derived growth factor subunit A Thrombospondin 4 furin	A0A1D5P8P3 A0A3Q2U6E1 E1C209 F1NBP0 F1NWX6 Q90WK2 Q91000 Q9I946	COL4A1 FURIN PDGF-A (L) PDGFA PDGFC PDGFD PLAT PLG SCDGF THBS4	Gallus gallus (chicken)
Initial triggering of complement	Collectin-10 Collectin-11 Complement C1q B chain Complement C1q C chain Mannose-binding protein Uncharacterized protein complement subcomponent C1r	A0A1D5PGB2 A0A1D5PIR0 A0A3Q3A736 F1NAB7 F1NH19 Q2LK95 Q98TA4	C1QB C1QC C1R CL1 COLEC10 COLEC11 MBL	Gallus gallus (chicken)	G49108TO G57321FI
Lectin pathway of complement activation	Collectin-10 Collectin-11 Mannose-binding protein	A0A3Q3A736 Q2LK95 Q98TA4	CL1 COLEC10 COLEC11 MBL	Gallus gallus (chicken)	G49108TO G57321FI
Creation of classical C3 convertase	Complement 4 Complement C1q B chain Complement C1q subcomponent subunit A Complement C1s subcomponent Complement factor B-like protease (Fragment) Ig lambda chain C region Ig lambda chain V-1 region Ig mu chain C region MAp19 MHC-linked complement C4 Mannan-binding lectin associated serine protease 2 Mannan-binding lectin associated serine protease 3 Mannose-binding protein VH1 protein (Fragment) complement subcomponent C1r	A0A3Q2UG72 A0A8V0Z078 A2N884 F1NAB7 F1NH19 P01875 P04210 P20763 P81475 Q076D6 Q5F3N3 Q6Q1Q7 Q6Q1Q8 Q6Q1Q9 Q98TA4	C1QA C1QB C1R C4 C4-2 MASP2 MBL RCJMB04_11h6 VH1	Gallus gallus (chicken)
Complement Cascade	Complement 4 Complement C3 Complement C5 Complement factor B-like protease (Fragment) Complement regulatory GPI-anchor protein Complement regulatory membrane protein MHC-linked complement C4	A0A3Q2UG72 A0A8V1AM71 P81475 Q076D6 Q4AEI5 Q90633 Q9DEG0	C4 C4-2 C5 CREG Cremp	Gallus gallus (chicken)
Norepinephrine Neurotransmitter Release Cycle	Complexin-1 Synaptosomal-associated protein 25 Synaptotagmin-1 Syntaxin-binding protein 1 Unc-13 homolog B	A0A1D5PHU2 E1C8G7 F1NY18 P47191 P60878	CPLX1 SNAP SNAP25 STXBP1 SYT1 UNC13B	Gallus gallus (chicken)
Estrogen-dependent gene expression	Core-binding factor beta subunit DNA-directed RNA polymerase II subunit E DNA-directed RNA polymerase subunit beta DNA-directed RNA polymerases I, II, and III subunit RPABC2 DNA-directed RNA polymerases I, II, and III subunit RPABC5 Forkhead box A1 GATA-binding factor 3 General transcription facter IIA subunit 1 variant 1 Histone H2A-IV Histone H2A.J Histone H2A.V Histone H2A Histone H2A Histone H2A Histone H2B 1/2/3/4/6 Histone H2B 5 Histone H2B 7 Histone H2B 8 Histone H2B Histone H2B Histone H3.2 Histone H3.3 Histone H4 Histone deacetylase 1 Nuclear receptor coactivator Nuclear receptor interacting protein 1 Nuclear receptor subfamily 5 group A member 2 Probable ATP-dependent RNA helicase DDX5 Protein c-Fos RNA polymerase II subunit C Runt-related transcription factor TATA-box-binding protein TLE family member 3, transcriptional corepressor Transcription initiation factor IIA subunit 2 YY2 transcription factor [histone H3]-trimethyl-L-lysine(9) demethylase peptidylprolyl isomerase	A0A1D5PCB1 A0A1D5PUH1 A0A1D5PY49 A0A1L1RNY8 A0A3Q2TSH5 A0A3Q2TTQ9 A0A3Q2U9P1 A0A3Q2UDI2 A0A3S5ZPN3 A1IIE5 A1IIE6 E1BSY6 E1BV97 F1NCB0 F1NDB6 F1NDD7 F1NHV6 F1NHV9 F1NQP4 F1P5G5 P02263 P02272 P0C1H3 P0C1H4 P0C1H5 P11939 P23825 P56517 P62801 P70082 P84229 P84247 Q5F393 Q6JLB1 Q9PSW9 Q9PT88 R4GIS3	CBFB DDX5 FKBP4 FOS FOXA1 GATA3 GTF2A1 GTF2A2 H2A-IX H2AF H2AFX H2AZ2 H2B-I H2B-II H2B-III H2B-IV H2B-V H2B-VI H2B-VII H2B-VIII H3-I H3-II H3-III H3-IV H3-IX H3-V H3-VI H3-VII H3-VIII H3-X H4-I H4-II H4-III H4-IV H4-V H4-VI H4-VII HDAC1 HDAC1A HIST1H2B5L KDM4B LOC100859381 LOC426037 NCOA1 NR5A2 NRIP1 POLR2B POLR2C POLR2E POLR2L RPB6 RUNX1 TBP TLE3 YY2	Gallus gallus (chicken)
RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function	Core-binding factor beta subunit Histone H2A-IV Histone H2A.J Histone H2A.V Histone H2A Histone H2A Histone H2A Histone H2B 1/2/3/4/6 Histone H2B 5 Histone H2B 7 Histone H2B 8 Histone H2B Histone H2B Histone H3.2 Histone H3.3 Histone H4 Histone deacetylase 1 RB binding protein 5, histone lysine methyltransferase complex subunit Runt-related transcription factor SIN3 transcription regulator family member A SIN3 transcription regulator family member B Uncharacterized protein	A0A1D5PY49 A0A1L1RNY8 A0A3Q2TTQ9 A0A3Q2UDI2 E1BX21 F1NDD7 F1NMJ8 F1NQP4 F1P5G5 P02263 P02272 P0C1H3 P0C1H4 P0C1H5 P56517 P62801 P70082 P84229 P84247 Q5ZIL1 Q5ZLX3 Q9PSW9	CBFB H2A-IX H2AF H2AFX H2AZ2 H2B-I H2B-II H2B-III H2B-IV H2B-V H2B-VI H2B-VII H2B-VIII H3-I H3-II H3-III H3-IV H3-IX H3-V H3-VI H3-VII H3-VIII H3-X H4-I H4-II H4-III H4-IV H4-V H4-VI H4-VII HDAC1 HDAC1A HIST1H2B5L LOC100859381 LOC426037 RBBP5 RCJMB04_25e24 RUNX1 SIN3A SIN3B	Gallus gallus (chicken)
Iron uptake and transport	Cullin 1 Cullin-associated NEDD8-dissociated protein 1 Cytoplasmic aconitate hydratase Ferritin heavy chain Iron-responsive element-binding protein 2 Plasma membrane ascorbate-dependent reductase CYBRD1 Polyubiquitin-B Proton-coupled folate transporter S-phase kinase-associated protein 1 Solute carrier family 40 member Ubiquitin B Ubiquitin-ribosomal protein eS31 fusion protein	A0A1D5P2L3 A0A1D5P546 A0A1D5PBJ1 A0A1D5PQ17 A0A1D5PQV0 F1NHL2 F1NJ67 P08267 P0CG62 P79781 Q5F3K3 Q5ZKF5	ACO1 CAND1 CUL1 CYBRD1 FTH IREB2 PCFT RPS27A SKP1 SKP1A SLC40A1 SLC46A1 UBA80 UBB	Gallus gallus (chicken)
Inactivation, recovery and regulation of the phototransduction cascade	Cyclic nucleotide-gated channel rod photoreceptor subunit alpha G protein-coupled receptor kinase G protein-coupled receptor kinase Guanylyl cyclase-activating protein 1 Guanylyl cyclase-activating protein 2 Rhodopsin Serine/threonine-protein phosphatase	E1BTX9 E1C4P5 F1P3Y2 P79880 P79881 Q5ZKL2 Q90980	GCAP1 GCAP2 GRK4 GRK7 GUCA1A GUCA1B PPEF1 RHO	Gallus gallus (chicken)

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