GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 76 - 100 of 250 in total
Pathway Name Protein Name UniProt ID Gene Symbol Organism GlyTouCan ID
RNA Pol II CTD phosphorylation and interaction with CE
  • ABD1
  • CCL1
  • CEG1
  • KIN28
  • LOM3
  • RAD25
  • RAD3
  • REM1
  • RIG2
  • RPA7
  • RPB1
  • RPB10
  • RPB11
  • RPB12
  • RPB150
  • RPB2
  • RPB220
  • RPB3
  • RPB4
  • RPB5
  • RPB6
  • RPB7
  • RPB8
  • RPB9
  • RPC10
  • RPC9
  • RPO21
  • RPO22
  • RPO26
  • SPT5
  • SSL1
  • SSL2
  • SSU71
  • SUA8
  • TFB1
  • TFB2
  • TFB3
  • TFB4
  • TFB5
  • TFG1
  • TFG2
  • UVS112
Saccharomyces cerevisiae (brewer's yeast)
Cooperation of PDCL (PhLP1) and TRiC/CCT in G-protein beta folding
  • ANC2
  • BIN2
  • BIN3
  • CCT1
  • CCT2
  • CCT3
  • CCT4
  • CCT5
  • CCT6
  • CCT7
  • CCT8
  • STE4
  • TCP1
  • TCP2
  • TCP20
  • TCP3
  • TCP4
  • TCP5
  • TCP6
Saccharomyces cerevisiae (brewer's yeast)
Heme degradation
  • ADP1
  • BAT1
  • BPT1
  • NFT1
  • VMR1
  • YBT1
  • YCF1
  • YOR1
  • YRS1
Saccharomyces cerevisiae (brewer's yeast)
Dectin-1 mediated noncanonical NF-kB signaling
  • BCK1
  • LAS3
  • SLK1
  • SSP31
Saccharomyces cerevisiae (brewer's yeast)
Acyl chain remodelling of PE
  • ALE1
  • CLD1
  • LCA1
  • LPT1
  • PLB1
  • PLB2
  • PLB3
  • SLC4
  • SPO1
Saccharomyces cerevisiae (brewer's yeast)
Synthesis, secretion, and inactivation of Glucagon-like Peptide-1 (GLP-1)
  • DAP2
Saccharomyces cerevisiae (brewer's yeast)
Regulation of Apoptosis
  • LAM1
  • MDM17
  • MGM1
  • OMA1
  • SPO15
  • VPS1
Saccharomyces cerevisiae (brewer's yeast)
Energy dependent regulation of mTOR by LKB1-AMPK
  • CAT1
  • CAT3
  • CCR1
  • CRP1
  • FRK1
  • GAL83
  • GLC2
  • KIN1
  • KIN2
  • KIN3
  • KIN31
  • KIN4
  • MDG1
  • PAS14
  • SCI1
  • SIP1
  • SIP2
  • SNF1
  • SNF4
  • SPM1
  • SPM2
Saccharomyces cerevisiae (brewer's yeast)
Sphingolipid de novo biosynthesis
  • ADP1
  • CYB5
  • DGT1
  • FAH1
  • LAC1
  • LAG1
  • LCB4
  • LCB5
  • SCS7
  • TIM54
  • TSC10
  • YOR1
  • YRS1
Saccharomyces cerevisiae (brewer's yeast)
Aspirin ADME
  • BAT1
  • BPT1
  • NFT1
  • VMR1
  • YBT1
  • YCF1
  • YOR1
  • YRS1
Saccharomyces cerevisiae (brewer's yeast)
Cargo recognition for clathrin-mediated endocytosis
  • AMP1
  • APL1
  • APL2
  • APL3
  • APM1
  • APM4
  • APS2
  • ATG27
  • BUD15
  • DSK2
  • EDE1
  • ENT1
  • ENT2
  • ETF1
  • MRL1
  • RUB1
  • SHE4
  • YAP17
  • YAP54
  • YAP80
Saccharomyces cerevisiae (brewer's yeast)
Golgi Cisternae Pericentriolar Stack Reorganization
  • CDC5
  • GRH1
  • MSD2
  • PKX2
  • YP2
  • YPT1
  • YPT11
Saccharomyces cerevisiae (brewer's yeast)
Sphingolipid catabolism
  • BST1
  • DPL1
  • DPP1
  • HFD1
  • LBP1
  • LBP2
  • LCB3
  • LPP1
  • YDC1
  • YSR2
  • YSR3
  • ZRG1
Saccharomyces cerevisiae (brewer's yeast)
Post-translational modification: synthesis of GPI-anchored proteins
  • FRA1
  • YJL132W
Saccharomyces cerevisiae (brewer's yeast)
TNFR2 non-canonical NF-kB pathway
  • BCK1
  • BLM10
  • BLM3
  • CIM3
  • CIM5
  • CRL13
  • CRL3
  • DOA3
  • DOA5
  • HRD2
  • LAS3
  • MPR1
  • NAS1
  • NAS2
  • NAS4
  • NAS5
  • NAS7
  • NIN1
  • PCS1
  • PRC1
  • PRC2
  • PRE1
  • PRE10
  • PRE2
  • PRE3
  • PRE4
  • PRE5
  • PRE6
  • PRE8
  • PRE9
  • PRG1
  • PRS1
  • PRS2
  • PRS4
  • PRS5
  • PUP1
  • PUP2
  • PUP3
  • RPD1
  • RPN1
  • RPN11
  • RPN12
  • RPN2
  • RPN3
  • RPN5
  • RPN6
  • RPN7
  • RPN8
  • RPN9
  • RPT1
  • RPT2
  • RPT3
  • RPT4
  • RPT5
  • RPT6
  • SCL1
  • SEN3
  • SLK1
  • SSP31
  • SUG1
  • SUG2
  • SUN2
  • TBPY
  • TBY1
  • YHS4
  • YNT1
  • YTA1
  • YTA2
  • YTA3
  • YTA5
Saccharomyces cerevisiae (brewer's yeast)
Transcriptional and post-translational regulation of MITF-M expression and activity
  • CRM1
  • DAC2
  • FUS3
  • GSK3
  • KAP124
  • KSS1
  • MCK1
  • MDS1
  • MPK1
  • MRK1
  • RIM11
  • RTG3
  • SLT2
  • SMK1
  • XPO1
  • YPK1
  • YPK3
Saccharomyces cerevisiae (brewer's yeast)
Oxidative Stress Induced Senescence
  • AAS101
  • AAS3
  • ARG9
  • CRT8
  • CSE4
  • CSL2
  • CYC8
  • GCN4
  • H2A1
  • H2A2
  • H2AZ
  • H2B1
  • H2B2
  • HHF1
  • HHF2
  • HHT1
  • HHT2
  • HOG1
  • HTA1
  • HTA2
  • HTA3
  • HTB1
  • HTB2
  • HTZ1
  • SIN2
  • SPT11
  • SPT12
  • SSK3
  • SSN6
  • STE11
  • TRX1
  • TRX2
  • TRX3
Saccharomyces cerevisiae (brewer's yeast)
RHOV GTPase cycle
  • BEM2
  • BEM3
  • CDC42
  • CHC1
  • CLA4
  • CYK1
  • DBM1
  • ERE2
  • IPL2
  • IQG1
  • LSB2
  • PIN3
  • RGA1
  • RGA2
  • RGD1
  • RHO5
  • RTT10
  • SKM1
  • SRO2
  • STE20
  • SUP9
  • THE1
  • TPM1
  • TRM734
  • YHR182W
Saccharomyces cerevisiae (brewer's yeast)
Ub-specific processing proteases
  • ADA2
  • ADA3
  • ADA4
  • BLM10
  • BLM3
  • CIM3
  • CIM5
  • CRL13
  • CRL3
  • DEP1
  • DOA3
  • DOA5
  • DOT4
  • FUN19
  • FUN54
  • GCN5
  • GRD19
  • H2A1
  • H2A2
  • H2B1
  • H2B2
  • HRD2
  • HTA1
  • HTA2
  • HTB1
  • HTB2
  • MIH1
  • MPR1
  • MRC1
  • NAS1
  • NAS2
  • NAS4
  • NAS5
  • NAS7
  • NGG1
  • NIN1
  • PCS1
  • PLC1
  • PLC2
  • PRC1
  • PRC2
  • PRE1
  • PRE10
  • PRE2
  • PRE3
  • PRE4
  • PRE5
  • PRE6
  • PRE8
  • PRE9
  • PRG1
  • PRS1
  • PRS2
  • PRS4
  • PRS5
  • PUP1
  • PUP2
  • PUP3
  • RCE1
  • RPD1
  • RPN1
  • RPN11
  • RPN12
  • RPN2
  • RPN3
  • RPN5
  • RPN6
  • RPN7
  • RPN8
  • RPN9
  • RPS10A
  • RPS10B
  • RPS1A
  • RPS1B
  • RPT1
  • RPT2
  • RPT3
  • RPT4
  • RPT5
  • RPT6
  • SCD2
  • SCL1
  • SDS3
  • SEN3
  • SNX3
  • SPT11
  • SPT12
  • SUG1
  • SUG2
  • SUN2
  • SWI7
  • SWI9
  • TAF10
  • TAF17
  • TAF23
  • TAF25
  • TAF9
  • TBPY
  • TBY1
  • TEP1
  • TRA1
  • UBI4
  • UBP10
  • UBP15
  • UBP2
  • UBP3
  • UBP6
  • UBP8
  • YEL077C
  • YHS4
  • YIL177C
  • YJL225C
  • YLL066C
  • YLL067C
  • YML133C
  • YNT1
  • YOR338W
  • YPR204W
  • YRF1-1
  • YRF1-2
  • YRF1-3
  • YRF1-4
  • YRF1-5
  • YRF1-6
  • YRF1-7
  • YRF1-8
  • YTA1
  • YTA2
  • YTA3
  • YTA5
Saccharomyces cerevisiae (brewer's yeast)
Beta-oxidation of pristanoyl-CoA
  • FOX1
  • POX1
  • PTE1
  • TES1
Saccharomyces cerevisiae (brewer's yeast)
TP53 Regulates Transcription of DNA Repair Genes
  • BUR1
  • BUR2
  • CCL1
  • CDC68
  • CST4
  • CTK1
  • CTK2
  • DST1
  • ELA1
  • ELC1
  • FCP1
  • KIN28
  • LOM3
  • POB3
  • PPR2
  • RAD25
  • RAD3
  • REM1
  • RIG2
  • RPA7
  • RPB1
  • RPB10
  • RPB11
  • RPB12
  • RPB150
  • RPB2
  • RPB220
  • RPB3
  • RPB4
  • RPB5
  • RPB6
  • RPB7
  • RPB8
  • RPB9
  • RPC10
  • RPC9
  • RPO21
  • RPO22
  • RPO26
  • SGV1
  • SPT16
  • SPT4
  • SPT5
  • SSF1
  • SSL1
  • SSL2
  • SSU71
  • SUA8
  • TFB1
  • TFB2
  • TFB3
  • TFB4
  • TFB5
  • TFG1
  • TFG2
  • UVS112
Saccharomyces cerevisiae (brewer's yeast)
RHOB GTPase cycle
  • ABY1
  • ACT1
  • CYK1
  • ECM25
  • END7
  • HPO2
  • HSS7
  • IQG1
  • PKC1
  • RDI1
  • RHO1
  • RHO2
  • RHO3
  • RHO4
  • SEC9
  • SPO20
  • STT1
  • TRE1
  • TRE2
  • VPS70
Saccharomyces cerevisiae (brewer's yeast)
Processing of Intronless Pre-mRNAs
  • BRR5
  • CBC1
  • CBC2
  • CBP20
  • CBP80
  • CFT1
  • CFT2
  • GCR3
  • MUD13
  • PFS2
  • PTA1
  • SAE1
  • STO1
  • SUT1
  • YDH1
  • YHH1
  • YSH1
  • YTH1
Saccharomyces cerevisiae (brewer's yeast)
Response to elevated platelet cytosolic Ca2+
  • HPO2
  • PKC1
  • STT1
Saccharomyces cerevisiae (brewer's yeast)
Negative regulation of MAPK pathway
  • DAC2
  • FUS3
  • KSS1
  • MPK1
  • PTP1
  • PTP2
  • PTP3
  • SLT2
  • SMK1
Saccharomyces cerevisiae (brewer's yeast)

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Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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Last updated: August 19, 2024