GlyCosmos Pathways

Integrated of pathway data, containing glycoproteins and glycans obtained from Reactome and the Metabolism of carbohydrates in Escherichia coli O-antigens obtained from ECODAB. Search by pathway name, species, and protein name.

Source Last Updated
Reactome March 20, 2024
ECODAB April 1, 2019
Displaying entries 76 - 100 of 250 in total
Pathway Name Protein Name UniProt ID Gene Symbol ▲ Organism GlyTouCan ID
Zinc influx into cells by the SLC39 gene family
  • ATX2
  • YKE4
Saccharomyces cerevisiae (brewer's yeast)
RAB GEFs exchange GTP for GDP on RABs
  • AUT11
  • AUT12
  • BET3
  • BET5
  • CCZ1
  • CVT16
  • GDI1
  • MON1
  • MRS6
  • MSI4
  • MUK1
  • RGP1
  • RIC1
  • SEC19
  • SEC2
  • SEC4
  • SRO6
  • TCA17
  • TRS120
  • TRS130
  • TRS20
  • TRS23
  • TRS31
  • TRS33
  • VAM4
  • VPS12
  • VPS21
  • VPS9
  • VPT12
  • VPT9
  • YP2
  • YPT1
  • YPT10
  • YPT11
  • YPT21
  • YPT51
  • YPT52
  • YPT53
  • YPT6
  • YPT7
Saccharomyces cerevisiae (brewer's yeast)
CD28 dependent PI3K/Akt signaling
  • AVO1
  • AVO3
  • BCK1
  • BIT2
  • BIT61
  • DRR2
  • KOM1
  • LAS3
  • LST8
  • PKH2
  • SCH9
  • SLI2
  • SLK1
  • SSP31
  • TOR2
  • TSC11
  • TSC14
  • YPK1
Saccharomyces cerevisiae (brewer's yeast)
VEGFR2 mediated vascular permeability
  • AVO1
  • AVO3
  • BIT2
  • BIT61
  • CPR1
  • DRR2
  • HSC82
  • HSP82
  • HSP90
  • KOM1
  • LST8
  • NCP1
  • NCPR1
  • PKH2
  • PRD1
  • SCH9
  • SLI2
  • TOR2
  • TSC11
  • TSC14
  • YPK1
Saccharomyces cerevisiae (brewer's yeast)
PI3K/AKT Signaling
  • AVO1
  • AVO3
  • BIT2
  • BIT61
  • DRR2
  • KOM1
  • LST8
  • PKH2
  • SCH9
  • SLI2
  • TOR2
  • TSC11
  • TSC14
  • YPK1
Saccharomyces cerevisiae (brewer's yeast)
Regulation of TP53 Degradation
  • AVO1
  • AVO3
  • BIT2
  • BIT61
  • DRR2
  • KOM1
  • LST8
  • PKH2
  • SCH9
  • SLI2
  • TOR2
  • TSC11
  • TSC14
  • YPK1
Saccharomyces cerevisiae (brewer's yeast)
Transport of inorganic cations/anions and amino acids/oligopeptides
  • AVT1
  • ERS1
  • PET8
Saccharomyces cerevisiae (brewer's yeast)
Amino acid transport across the plasma membrane
  • AVT2
  • AVT4
  • ESBP6
  • FSP2
  • IMA2
  • IMA3
  • IMA4
  • MCH2
  • MCH3
  • MCH4
  • MCH5
  • MUP1
  • MUP3
Saccharomyces cerevisiae (brewer's yeast)
CDC42 GTPase cycle
  • BAG7
  • BEM2
  • BEM3
  • BUD15
  • CDC42
  • CDC70
  • DAC1
  • DBM1
  • DIM2
  • ECM25
  • EDE1
  • END3
  • FUS2
  • GPA1
  • IPL2
  • IRS4
  • MDP3
  • MIP3
  • PAN1
  • RDI1
  • RGA1
  • RGA2
  • RGD1
  • SAC7
  • SCG1
  • SRO2
  • SUP9
  • THE1
  • YHR182W
Saccharomyces cerevisiae (brewer's yeast)
Branched-chain amino acid catabolism
  • BAT1
  • BAT2
  • ECA39
  • EHD3
  • MRP5
  • TWT1
  • TWT2
Saccharomyces cerevisiae (brewer's yeast)
Recycling of bile acids and salts
  • BAT1
  • BPT1
  • FAT1
  • NFT1
  • VMR1
  • YBT1
  • YCF1
  • YOR1
  • YRS1
Saccharomyces cerevisiae (brewer's yeast)
ABC-family proteins mediated transport
  • BAT1
  • BPT1
  • GCD11
  • NEW1
  • NFT1
  • SUI2
  • SUI3
  • SUI4
  • TIF211
  • TIF212
  • TIF213
  • VMR1
  • YBT1
  • YCF1
  • YOR1
  • YRS1
Saccharomyces cerevisiae (brewer's yeast)
Aspirin ADME
  • BAT1
  • BPT1
  • NFT1
  • VMR1
  • YBT1
  • YCF1
  • YOR1
  • YRS1
Saccharomyces cerevisiae (brewer's yeast)
Atorvastatin ADME
  • BAT1
  • BPT1
  • NFT1
  • VMR1
  • YBT1
  • YCF1
  • YOR1
  • YRS1
Saccharomyces cerevisiae (brewer's yeast)
TNFR2 non-canonical NF-kB pathway
  • BCK1
  • BLM10
  • BLM3
  • CIM3
  • CIM5
  • CRL13
  • CRL3
  • DOA3
  • DOA5
  • HRD2
  • LAS3
  • MPR1
  • NAS1
  • NAS2
  • NAS4
  • NAS5
  • NAS7
  • NIN1
  • PCS1
  • PRC1
  • PRC2
  • PRE1
  • PRE10
  • PRE2
  • PRE3
  • PRE4
  • PRE5
  • PRE6
  • PRE8
  • PRE9
  • PRG1
  • PRS1
  • PRS2
  • PRS4
  • PRS5
  • PUP1
  • PUP2
  • PUP3
  • RPD1
  • RPN1
  • RPN11
  • RPN12
  • RPN2
  • RPN3
  • RPN5
  • RPN6
  • RPN7
  • RPN8
  • RPN9
  • RPT1
  • RPT2
  • RPT3
  • RPT4
  • RPT5
  • RPT6
  • SCL1
  • SEN3
  • SLK1
  • SSP31
  • SUG1
  • SUG2
  • SUN2
  • TBPY
  • TBY1
  • YHS4
  • YNT1
  • YTA1
  • YTA2
  • YTA3
  • YTA5
Saccharomyces cerevisiae (brewer's yeast)
Dectin-1 mediated noncanonical NF-kB signaling
  • BCK1
  • LAS3
  • SLK1
  • SSP31
Saccharomyces cerevisiae (brewer's yeast)
NIK-->noncanonical NF-kB signaling
  • BCK1
  • LAS3
  • SLK1
  • SSP31
Saccharomyces cerevisiae (brewer's yeast)
RHO GTPases Activate NADPH Oxidases
  • BEM1
  • END12
  • ESS1
  • GRD8
  • HPO2
  • PEP15
  • PIN1
  • PKC1
  • PTF1
  • SRO1
  • STT1
  • VAC4
  • VPL19
  • VPL7
  • VPS15
  • VPS34
  • VPT29
Saccharomyces cerevisiae (brewer's yeast)
RHOD GTPase cycle
  • BEM2
  • BEM3
  • CAP2
  • CLA4
  • DBM1
  • ECM25
  • IPL2
  • RGA1
  • RGA2
  • RGD1
  • RHO1
  • RHO2
  • RHO3
  • RHO4
  • SKM1
  • STE20
  • SUP9
  • THE1
  • VAM4
  • YHR182W
  • YPT7
Saccharomyces cerevisiae (brewer's yeast)
RHOV GTPase cycle
  • BEM2
  • BEM3
  • CDC42
  • CHC1
  • CLA4
  • CYK1
  • DBM1
  • ERE2
  • IPL2
  • IQG1
  • LSB2
  • PIN3
  • RGA1
  • RGA2
  • RGD1
  • RHO5
  • RTT10
  • SKM1
  • SRO2
  • STE20
  • SUP9
  • THE1
  • TPM1
  • TRM734
  • YHR182W
Saccharomyces cerevisiae (brewer's yeast)
RHOF GTPase cycle
  • BEM2
  • BEM3
  • DBM1
  • ECM25
  • IPL2
  • RGA1
  • RGA2
  • RGD1
  • RHO1
  • RHO2
  • RHO3
  • RHO4
  • SUP9
  • THE1
  • YHR182W
Saccharomyces cerevisiae (brewer's yeast)
RAB geranylgeranylation
  • BET2
  • BET4
  • MRS6
  • MSI4
  • SEC4
  • SRO6
  • VAM4
  • VPS12
  • VPS21
  • VPT12
  • YHR022C
  • YP2
  • YPT1
  • YPT10
  • YPT11
  • YPT21
  • YPT31
  • YPT32
  • YPT51
  • YPT52
  • YPT53
  • YPT6
  • YPT7
  • YPT8
Saccharomyces cerevisiae (brewer's yeast)
MAPK6/MAPK4 signaling
  • BLM10
  • BLM3
  • CDC14
  • CDC42
  • CIM3
  • CIM5
  • CLA4
  • CRL13
  • CRL3
  • CRM1
  • DAC2
  • DOA3
  • DOA5
  • FUS3
  • HRD2
  • KAP124
  • KSS1
  • MPK1
  • MPR1
  • NAS1
  • NAS2
  • NAS4
  • NAS5
  • NAS7
  • NIN1
  • OAF3
  • PCS1
  • PRC1
  • PRC2
  • PRE1
  • PRE10
  • PRE2
  • PRE3
  • PRE4
  • PRE5
  • PRE6
  • PRE8
  • PRE9
  • PRG1
  • PRS1
  • PRS2
  • PRS4
  • PRS5
  • PUP1
  • PUP2
  • PUP3
  • RPD1
  • RPN1
  • RPN11
  • RPN12
  • RPN2
  • RPN3
  • RPN5
  • RPN6
  • RPN7
  • RPN8
  • RPN9
  • RPT1
  • RPT2
  • RPT3
  • RPT4
  • RPT5
  • RPT6
  • SCD2
  • SCL1
  • SEN3
  • SKM1
  • SLT2
  • SMK1
  • SRO2
  • STE20
  • SUG1
  • SUG2
  • SUN2
  • TBPY
  • TBY1
  • UBI4
  • XPO1
  • YHS4
  • YNT1
  • YTA1
  • YTA2
  • YTA3
  • YTA5
Saccharomyces cerevisiae (brewer's yeast)
Regulation of PTEN stability and activity
  • BLM10
  • BLM3
  • CIM3
  • CIM5
  • CKA1
  • CKA2
  • CKB2
  • CRL13
  • CRL3
  • DOA3
  • DOA5
  • HRD2
  • MDP1
  • MPR1
  • NAS1
  • NAS2
  • NAS4
  • NAS5
  • NAS7
  • NIN1
  • NPI1
  • PCS1
  • PRC1
  • PRC2
  • PRE1
  • PRE10
  • PRE2
  • PRE3
  • PRE4
  • PRE5
  • PRE6
  • PRE8
  • PRE9
  • PRG1
  • PRS1
  • PRS2
  • PRS4
  • PRS5
  • PUP1
  • PUP2
  • PUP3
  • RPD1
  • RPN1
  • RPN11
  • RPN12
  • RPN2
  • RPN3
  • RPN5
  • RPN6
  • RPN7
  • RPN8
  • RPN9
  • RPT1
  • RPT2
  • RPT3
  • RPT4
  • RPT5
  • RPT6
  • RSP5
  • SCD2
  • SCL1
  • SEN3
  • SUG1
  • SUG2
  • SUN2
  • TBPY
  • TBY1
  • TEP1
  • UBI4
  • YHS4
  • YNT1
  • YTA1
  • YTA2
  • YTA3
  • YTA5
Saccharomyces cerevisiae (brewer's yeast)
Ubiquitin Mediated Degradation of Phosphorylated Cdc25A
  • BLM10
  • BLM3
  • CIM3
  • CIM5
  • CRL13
  • CRL3
  • DOA3
  • DOA5
  • DUN1
  • HRD2
  • KSP1
  • MIH1
  • MPR1
  • NAS1
  • NAS2
  • NAS4
  • NAS5
  • NAS7
  • NIN1
  • PCS1
  • PRC1
  • PRC2
  • PRE1
  • PRE10
  • PRE2
  • PRE3
  • PRE4
  • PRE5
  • PRE6
  • PRE8
  • PRE9
  • PRG1
  • PRS1
  • PRS2
  • PRS4
  • PRS5
  • PUP1
  • PUP2
  • PUP3
  • RCK1
  • RPD1
  • RPN1
  • RPN11
  • RPN12
  • RPN2
  • RPN3
  • RPN5
  • RPN6
  • RPN7
  • RPN8
  • RPN9
  • RPT1
  • RPT2
  • RPT3
  • RPT4
  • RPT5
  • RPT6
  • SCD2
  • SCL1
  • SEN3
  • SUG1
  • SUG2
  • SUN2
  • TBPY
  • TBY1
  • UBI4
  • YHS4
  • YNT1
  • YTA1
  • YTA2
  • YTA3
  • YTA5
Saccharomyces cerevisiae (brewer's yeast)

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GlyCosmos is a member of the GlySpace Alliance together with GlyGen and Glycomics@ExPASy.

Acknowledgements

Supported by JST NBDC Grant Number JPMJND2204

Partly supported by NIH Common Fund Grant #1U01GM125267-01


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