Submissions
GlyTouCan
Glycan Structure Repository
GlyComb
Glycoconjugate Repository
GlycoPOST
Glycomics MS raw data Repository
UniCarb-DR
Glycomics MS Repository for glycan annotations from GlycoWorkbench
LM-GlycoRepo
Repository for lectin-assisted multimodality data
All Resources
Genes / Proteins / Lipids Glycans / Glycoconjugates Glycomes Pathways / Interactions / Diseases / Organisms
GlyCosmos RDF
| Name | Last Updated | Dump Files |
|---|---|---|
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Alliance of Genome Resources
Alliancegenome
Dataset of diseases, gene expression and orthologs related to glycogenes in Alliance of Genome Resources. RDF created by GlyCosmos.
http://rdf.glycosmos.org/genomealliance
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October 9, 2024 | Download genomealliance_Orthology_rdf.ttl.gz Download genomealliance_RDF.ttl.gz Download genomealliance_disease_rdf.ttl.gz Download genomealliance_expression_rdf.ttl.gz |
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CAZy
Cazy
Dataset of Carbohydrate-related enzymes in The CAZy. RDF created by GlyCosmos.
http://rdf.glycosmos.org/cazy
|
September 19, 2024 | Download CAZy_RDF.ttl.gz Download CAZy_label.ttl.gz Download CAZy_uniprot_RDF.ttl.gz |
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GlyCosmos Disease
GlyCosmos Diseases
GlyCosmos' original dataset integrating disease information related to glycan-related genes obtained from the Alliance of Genome Resources and disease information from the Glyco-Disease Genes Database (GDGDB). This dataset is integrated with DO IDs (Disease Ontology IDs).
http://rdf.glycosmos.org/disease
|
November 14, 2024 | Download glycosmos_disease_RDF.ttl.gz Download glycosmos_disease_uniprot_RDF.ttl.gz |
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GlyCosmos Disease (PubChem)
GlyCosmos Diseases
Dataset of diseases related to glycogenes in PubChem. RDF created by GlyCosmos.
http://rdf.glycosmos.org/disease/pubchem
|
April 17, 2024 | Download Pubchem_disease.ttl.gz |
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Human Phenotype Ontology
GlyCosmos Diseases
Dataset of diseases related to glycogenes in Human Phenotype Ontology. RDF created by GlyCosmos.
http://rdf.glycosmos.org/hpo
|
July 7, 2023 | Download HPO_RDF.ttl.gz Download HPO_do_RDF.ttl.gz Download hp.owl.gz |
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FlyGlycoDB
Flyglycodb
Dataset of glycan related Drosophila gene in FlyGlycoDB. RDF created by GlyCosmos.
http://www.flyglycodb.org/fgdb
|
March 25, 2024 | Download fgdb.ttl.gz Download fgdb_activity.ttl.gz Download fgdb_mutant.ttl.gz Download fgdb_uniprot_go.ttl.gz Download flyglycodb_ontologies.ttl.gz |
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GALAXY
Galaxy
Dataset of glycoanalysis by the three axes of MS and chromatography in GALAXY. RDF created by GlyCosmos.
http://rdf.glycosmos.org/galaxy
|
March 31, 2022 | Download galaxy.ttl.gz Download galaxy_node.ttl.gz |
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External Link
GlyCosmos Glycans
Dataset of glycan external links. (GlyConnect, PubChem, ChEBI, Human Metabolome Database (HMDB))
http://rdf.glycosmos.org/glycans
|
June 10, 2024 | Download Glycan_external_RDF.ttl.gz |
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GlyCosmos Glycans
GlyCosmos Glycans
Dataset of validated glycans in GlyTouCan. This dataset includes notations from GlycoCT, WURCS, IUPAC, GLYCAM, and others. RDF created by Glycosmos and updated weekly.
http://rdf.glycosmos.org/glycans/glycosequence
|
December 8, 2024 | Download glycosequence_000001.ttl.gz |
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Motif
GlyCosmos Glycans
Dataset of glycan motif label in GlycoNAVI-Motif.
http://rdf.glycosmos.org/glycans/motif_label
|
April 11, 2022 | Download motif.ttl.gz |
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Subsumption
GlyCosmos Glycans
Dataset of validated glycans in GlyTouCan. This dataset includes subsumption. RDF created by Glycosmos and updated weekly.
http://rdf.glycosmos.org/glycans/subsumption
|
December 8, 2024 | Download subsumption_000001.ttl.gz |
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Taxonomy
GlyCosmos Glycans
Dataset of glycan and organism in GlyGen, GlyTouCan. RDF created by GlyCosmos.
http://rdf.glycosmos.org/glycans/taxon
|
January 11, 2024 | Download glycan_taxon.ttl.gz |
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Trivialname
GlyCosmos Glycans
Trivial names for glycans.
http://rdf.glycosmos.org/glycans/trivialname
|
March 14, 2022 | Download trivialname.ttl.gz |
|
WURCS-RDF
GlyCosmos Glycans
Dataset of validated glycans in GlyTouCan. This dataset includes wurcsrdf. RDF created by Glycosmos and updated weekly.
http://rdf.glycosmos.org/glycans/wurcsrdf
|
December 8, 2024 | Download wurcsrdf_000001.ttl.gz |
|
MCAW
GlyCosmos Glycans
Dataset of analysis for glycans recognised by Glycan Binding Proteins.
http://rdf.glycosmos.org/mcaw_glycans
|
July 10, 2019 | Download mcaw.ttl.gz |
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GlycomeAtlas
GlyCosmos Glycans
Dataset of Localisation of glycan structures in Human, Mouse and Zebrafish from GlycomeAtlas. RDF created by GlyCosmos.
http://rdf.glycosmos.org/glycomeatlas
|
November 7, 2018 | Download glycomeAtlas-Human.ttl.gz Download glycomeAtlas-Mouse.ttl.gz Download glycomeAtlas-Zebrafish.ttl.gz |
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PubMed
GlyCosmos Glycans
Datasets of literature information on glycans.
http://rdf.glycosmos.org/pubmed
|
January 26, 2022 | Download pubmed.ttl.gz |
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Glycobase
Glycobase
Dataset of the HPLC elution positions for over 350 2-AB labelled N-glycan structures together with predicted products of exoglycosidase digestions in GlycoBase . RDF created by GlyCosmos.
http://rdf.glycosmos.org/glycans/glycobase
|
April 18, 2024 | Download glycobase.ttl.gz |
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GlycoStore
GlycoStore
Dataset of curated chromatographic, electrophoretic and mass-spectrometry composition database of N-, O-, glycosphingolipid (GSL) glycans and free oligosaccharides associated with a range of glycoproteins, glycolipids and biotherapeutics in GlycoStore . RDF created by GlyCosmos.
http://rdf.glycosmos.org/glycans/glycostore
|
July 24, 2024 | Download Glycostore_gtc_RDF.ttl.gz |
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GlyCosmos Genes
GlyCosmos Genes
GlyCosmos' original dataset integrating glycogenes (glycosyltransferases, hydrolase, etc.) from KEGG, UniProt, Plantgarden, FlyGlycoDB, and GlycoGene Database (GGDB).
This dataset is integrated with NCBI Gene ID .
http://rdf.glycosmos.org/glycogenes
|
November 12, 2024 | Download glycogene_RDF.ttl.gz Download glycogene_go_RDF.ttl.gz Download glycogene_go_uniprot_RDF.ttl.gz |
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ChIP-Atlas Colocalization
GlyCosmos Genes
Dataset of co-localized protein related to glycogenes in ChIP-Atlas.
http://rdf.glycosmos.org/chipatlas_colo
|
February 9, 2022 | Download chipatlas_colo.ttl.gz |
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ChIP-Atlas Target Genes
GlyCosmos Genes
Dataset of candidate target gene related to glycogenes in ChIP-Atlas.
http://rdf.glycosmos.org/chipatlas_genes
|
February 9, 2022 | Download chipatlas_genes.ttl.gz |
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Rhea
GlyCosmos Genes
Dataset of glycogenes added to Rhea's information on catalysis of reactions.
http://rdf.glycosmos.org/Rhea
|
May 29, 2024 | Download chebi.owl.gz Download glycogenes_enzyme_RDF.ttl.gz Download rhea.rdf.gz |
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LIPID MAPS Proteome Database (LMSD)
GlyCosmos Glycolipids
Dataset of glycolipid in LIPID MAPS Proteome Database (LMSD). RDF created by GlyCosmos.
http://rdf.glycosmos.org/glycolipid
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June 16, 2024 | Download LIPIDMAPS_glycolipid.ttl.gz |
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SwissLipids
GlyCosmos Glycolipids
Dataset of lipid in SwissLipids. RDF created by GlyCosmos.
http://rdf.glycosmos.org/swisslipids
|
June 18, 2024 | Download swisslipids_RDF.ttl.gz Download swisslipids_go_RDF.ttl.gz |
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GlyCosmos Glycoproteins
GlyCosmos Glycoprotein
GlyCosmos' original dataset integrating glycoproteins from UniProt, GlyGen, GlyConnect, The O-GlcNAc Database, and GlycoProtDB .
This dataset is integrated with UniProt ID .
http://rdf.glycosmos.org/glycoprotein
|
November 20, 2024 | Download Glycoprotein_RDF.ttl.gz Download Glycoprotein_annotation_RDF.ttl.gz Download Glycoprotein_genename_RDF.ttl.gz Download Glycoprotein_go_RDF.ttl.gz Download glycan.ttl.gz Download uniprot_Proteoglycan_RDF.ttl.gz |
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MCAW
GlyCosmos Glycoprotein
Dataset of analysis for glycans recognised by Glycan Binding Proteins.
http://glycosmos.org/uniprot2mcaw
|
July 10, 2019 | Download uniprot2mcaw.ttl.gz |
|
GlyCosmos Lectins
GlyCosmos Lectins
GlyCosmos' original dataset integrating lectins from UniProt, Lectin Frontier DataBase (LfDB), UniLectin, CarboGrove .
This dataset is integrated with GlyCosmos Lectin Number (GL No.) .
http://rdf.glycosmos.org/lectin
|
June 6, 2024 | Download Lectins_RDF.ttl.gz Download uniprot_lectins_RDF.ttl.gz |
|
CarboGrove
GlyCosmos Lectins
Dataset of analyzed glycan-array data and glycan-binding proteins from CarboGrove. RDF created by GlyCosmos.
http://rdf.glycosmos.org/carbogrove
|
June 14, 2023 | Download carbogrove_RDF.ttl.gz |
|
LIPID MAPS Proteome Database (LMPD)
Lipidmap
Dataset of lipid-related genes and proteins in LIPID MAPS Proteome Database (LMPD). RDF created by GlyCosmos.
http://rdf.glycosmos.org/lipidmaps_gene
|
June 19, 2024 | Download LIPIDMAPS_glycogene_RDF.ttl.gz |
|
MatrixDB
MatrixDB
Dataset of molecular interactions between extracellular proteins and polysaccharides in MatrixDB. RDF created by GlyCosmos.
http://rdf.glycosmos.org/matrixdb
|
May 10, 2022 | Download biomolecules11_rdf.ttl.gz Download core_complete_ver11_rdf.ttl.gz Download full_complete_ver11_rdf.ttl.gz Download matrixdb_label.ttl.gz |
|
Plant Garden
Plantgarden
Dataset of plants’ glycogenes in PlantGarden. RDF created by GlyCosmos.
http://rdf.glycosmos.org/plantgarden
|
May 28, 2020 | Download kegg_plantgarden_RDF.ttl.gz Download kegg_plantgarden_ko_RDF.ttl.gz Download kegg_plantgarden_uniprot_RDF.ttl.gz Download plantgarden_RDF.ttl.gz |
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SugarBind
Sugarbind
Dataset of carbohydrate sequences to which pathogenic organisms (bacteria, toxins and viruses) specifically adhere in SugarBind. RDF created by GlyCosmos.
http://rdf.glycosmos.org/sugarbind
|
October 4, 2022 | Download agent.ttl.gz Download area.ttl.gz Download disease.ttl.gz Download lectin.ttl.gz Download ligand.ttl.gz Download ontology.owl.gz Download pubmed.ttl.gz Download referenced_interaction.ttl.gz Download structure.ttl.gz |
|
GyCosmos Pathways
GlyCosmos Pathways
GlyCosmos' original dataset adding glycan-related pathways, glycoproteins, GlyTouCan ID to the Reactome pathway information.
http://rdf.glycosmos.org/pathway
|
November 12, 2024 | Download Reactome_glycosmos.ttl.gz Download pathway_chebi_glytoucan_RDF.ttl.gz Download pathway_kegg_glytoucan_RDF.ttl.gz Download pathway_pubchem_glytoucan_RDF.ttl.gz Download reactome_uniprot.ttl.gz Download uniprot_to_organism_reactome.ttl.gz |
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GyCosmos Pathways (inference)
GlyCosmos Pathways
Dataset for Pathways’ inference.
http://rdf.glycosmos.org/pathway/inference
|
November 12, 2024 | Download pathway_gtc.ttl.gz Download pathway_inference.ttl.gz Download pathway_uniprot.ttl.gz Download top_pathway_RDF.ttl.gz |
|
Reactome
GlyCosmos Pathways
Original data from Reactome (Version 90) .
http://rdf.glycosmos.org/pathway_reactome_v90
|
November 12, 2024 | Download Bos_taurus.owl.gz Download Caenorhabditis_elegans.owl.gz Download Canis_familiaris.owl.gz Download Danio_rerio.owl.gz Download Dictyostelium_discoideum.owl.gz Download Drosophila_melanogaster.owl.gz Download Gallus_gallus.owl.gz Download Homo_sapiens.owl.gz Download Mus_musculus.owl.gz Download Plasmodium_falciparum.owl.gz Download Rattus_norvegicus.owl.gz Download Saccharomyces_cerevisiae.owl.gz Download Schizosaccharomyces_pombe.owl.gz Download Sus_scrofa.owl.gz Download Xenopus_tropicalis.owl.gz |
|
ECODAB
GlyCosmos Pathways
Dataset of Escherichia coli O-antigen in ECODAB . RDF created by GlyCosmos.
http://rdf.glycosmos.org/Pathways_LPS
|
April 1, 2019 | Download lps.ttl.gz Download lps_pathway_id.ttl.gz |
|
The Human Protein Atlas
Human Protein Atlas
Dataset of expression profiles for proteins in human normal tissues in The Human Protein Atlas. RDF created by GlyCosmos.
http://rdf.glycosmos.org/HPA
|
June 19, 2023 | Download hpa.ttl.gz Download hpa_id.ttl.gz |
All Graphs
| Title | Graph Name | Last Updated | Number of Triples |
|---|---|---|---|
| Alliance of Genome Resources | http://rdf.glycosmos.org/genomealliance | 2024-07-29 | 948,147 |
| CAZy | http://rdf.glycosmos.org/cazy | 2022-05-09 | 16,508,516 |
| GlyCosmos Disease | http://rdf.glycosmos.org/disease | 2024-07-29 | 230,087 |
| GlyCosmos Disease (PubChem) | http://rdf.glycosmos.org/disease/pubchem | 2024-04-17 | 13,502 |
| Human Phenotype Ontology | http://rdf.glycosmos.org/hpo | 2023-07-07 | 1,034,098 |
| FlyGlycoDB | http://www.flyglycodb.org/fgdb | 2024-03-25 | 9,166 |
| GALAXY | http://rdf.glycosmos.org/galaxy | 2022-03-31 | 36,832 |
| External Link | http://rdf.glycosmos.org/glycans | 2024-06-10 | 313,770 |
| Motif | http://rdf.glycosmos.org/glycans/motif_label | 2022-04-11 | 1,116 |
| Taxonomy | http://rdf.glycosmos.org/glycans/taxon | 2024-01-11 | 170,730 |
| Trivialname | http://rdf.glycosmos.org/glycans/trivialname | 2022-03-14 | 5,657 |
| MCAW | http://rdf.glycosmos.org/mcaw_glycans | 2019-07-10 | 145 |
| GlycomeAtlas | http://rdf.glycosmos.org/glycomeatlas | 2018-11-07 | 6,012 |
| PubMed | http://rdf.glycosmos.org/pubmed | 2022-01-26 | 66,377 |
| Glycobase | http://rdf.glycosmos.org/glycans/glycobase | 2024-04-18 | 5,448 |
| GlycoStore | http://rdf.glycosmos.org/glycans/glycostore | 2024-07-24 | 15,084 |
| GlyCosmos Genes | http://rdf.glycosmos.org/glycogenes | 2024-07-08 | 14,636,369 |
| HGNC | http://rdf.glycosmos.org/hgnc | 2023-05-02 | 42,834 |
| ChIP-Atlas Colocalization | http://rdf.glycosmos.org/chipatlas_colo | 2022-02-09 | 17,979 |
| ChIP-Atlas Target Genes | http://rdf.glycosmos.org/chipatlas_genes | 2022-02-09 | 53,056 |
| Rhea | http://rdf.glycosmos.org/Rhea | 2024-05-29 | 5,339,629 |
| LIPID MAPS Proteome Database (LMSD) | http://rdf.glycosmos.org/glycolipid | 2024-06-16 | 62,514 |
| SwissLipids | http://rdf.glycosmos.org/swisslipids | 2024-06-18 | 1,955 |
| GlyCosmos Glycoproteins | http://rdf.glycosmos.org/glycoprotein | 2024-06-06 | 9,418,159 |
| MCAW | http://glycosmos.org/uniprot2mcaw | 2019-07-10 | 228 |
| GlyCOVID | http://doi.org/10.3390/pathogens10040438 | 2022-03-14 | 36,955 |
| PSICQUIC | http://rdf.glycosmos.org/psicquic | 2022-03-30 | 24,013,074 |
| GlyCOVID (PubChem) | http://rdf.glycosmos.org/glycovid_pubchem | 2022-03-14 | 2,769,526 |
| GlyCosmos Lectins | http://rdf.glycosmos.org/lectin | 2024-06-06 | 101,990 |
| CarboGrove | http://rdf.glycosmos.org/carbogrove | 2023-06-14 | 1,312,355 |
| LIPID MAPS Proteome Database (LMPD) | http://rdf.glycosmos.org/lipidmaps_gene | 2024-06-19 | 57,339 |
| MatrixDB | http://rdf.glycosmos.org/matrixdb | 2022-05-10 | 209,674 |
| Plant Garden | http://rdf.glycosmos.org/plantgarden | 2020-05-28 | 246,667 |
| SugarBind | http://rdf.glycosmos.org/sugarbind | 2022-10-04 | 19,649 |
| GyCosmos Pathways | http://rdf.glycosmos.org/pathway | 2024-03-20 | 867,983 |
| GyCosmos Pathways (inference) | http://rdf.glycosmos.org/pathway/inference | 2024-03-20 | 326,138 |
| Reactome | http://rdf.glycosmos.org/pathway_reactome_v90 | 2024-03-20 | 20,485,887 |
| ECODAB | http://rdf.glycosmos.org/Pathways_LPS | 2019-04-01 | 43,431 |
| The Human Protein Atlas | http://rdf.glycosmos.org/HPA | 2023-06-19 | 4,820,803 |
| Microbial Genome Database | http://rdf.glycosmos.org/mbgd | 2024-10-22 | 29,631,351 |
| KEGG | http://rdf.glycosmos.org/kegg | 2024-02-07 | 2,029,561 |
| Glyco-Disease Genes Database (GDGDB) | http://rdf.glycoinfo.org/gdgdb | 2017-01-25 | 3,530 |
| GlycoGene Database (GGDB) | http://rdf.glycoinfo.org/ggdb | 2018-01-26 | 85,917 |
| GGDonto | http://rdf.glycoinfo.org/ggdonto | 2016-09-01 | 39,518 |
| GlycoProtDB | http://rdf.glycoinfo.org/gpdb | 2021-10-01 | 3,021,719 |
| GlycoProtDB2GlyTouCan | http://rdf.glycoinfo.org/gpdb2gtc | 2018-12-04 | 1,744 |
| Lectin Frontier DataBase (LfDB) | http://rdf.glycoinfo.org/lfdb | 2018-04-06 | 266,464 |
| Pathogen Adherence to Carbohydrate Database (PACDB) | http://rdf.glycoinfo.org/paconto | 2016-06-01 | 82,435 |
| GlycoEpitope | http://rdf.glycoinfo.org/glycoepitope | 2015-11-18 | 30,150 |
| PubChem | http://rdf.glycosmos.org/pubchem | 2024-03-26 | 23,208,157 |
| DDBJ taxonomy | http://ddbj.nig.ac.jp/ontologies/taxonomy/ | 2024-03-26 | 37,691,352 |
| Disease Ontology | http://purl.obolibrary.org/obo/doid | 2024-03-28 | 267,663 |
| Gene Ontology | http://purl.obolibrary.org/obo/go.owl | 2023-11-15 | 1,423,945 |
| Uber-anatomy ontology | http://purl.obolibrary.org/obo/uberon | 2023-06-27 | 1,101,004 |
| UBERON (Subset for GlycomeAtlas) | http://rdf.glycosmos.org/uberon | 2023-06-27 | 48,853 |
| MONDO Disease Ontology | http://rdf.glycosmos.org/mondo | 2024-04-02 | 2,485,806 |
| Semanticscience Integrated Ontology | http://semanticscience.org/ontology/sio.owl | 2023-03-26 | 15,734 |
| Evidence and Conclusion Ontology | http://purl.obolibrary.org/obo/eco.owl | 2024-04-15 | 74,754 |
